Mining protein complexes based on topology potential from weighted dynamic PPI network. - Xiujuan Lei; Yuchen Zhang 003; Fang-Xiang Wu; Aidong Zhang (BIBM, 2016)

Detecting Firefly Algorithm for Numerical Optimization. - Yuchen Zhang 003; Xiujuan Lei; Ying Tan 002 (ICSI (1), 2016)

Firefly Clustering Method for Mining Protein Complexes. - Yuchen Zhang 003; Xiujuan Lei; Ying Tan 002 (ICSI (1), 2017)

Topology potential based seed-growth method to identify protein complexes on dynamic PPI data. - Xiujuan Lei; Yuchen Zhang 003; Shi Cheng; Fang-Xiang Wu; Witold Pedrycz (Inf. Sci., 2018)

PDG-PIO: Predicting Disease-genes Based on Pigeon-inspired Optimization. - Yuchen Zhang 003; Xiujuan Lei; Shi Cheng (CEC, 2019)

Predicting disease-genes based on network information loss and protein complexes in heterogeneous network. - Xiujuan Lei; Yuchen Zhang 003 (Inf. Sci., 2019)

Identification of Pathway-Specific Protein Domain by Incorporating Hyperparameter Optimization Based on 2D Convolutional Neural Network. - Ali Ghulam; Xiujuan Lei; Yuchen Zhang 003; Shi Cheng; Min Guo (IEEE Access, 2020)

CircRNA-disease associations prediction based on metapath2vec++ and matrix factorization. - Yuchen Zhang 003; Xiujuan Lei; Zengqiang Fang; Yi Pan 001 (Big Data Min. Anal., 2020)

A comprehensive survey on computational methods of non-coding RNA and disease association prediction. - Xiujuan Lei; Thosini Bamunu Mudiyanselage; Yuchen Zhang 003; Chen Bian; Wei Lan; Ning Yu 004; Yi Pan 001 (Briefings Bioinform., 2021)

Prediction of disease-associated circRNAs via circRNA-disease pair graph and weighted nuclear norm minimization. - Yuchen Zhang 003; Xiujuan Lei; Yi Pan 001; Witold Pedrycz (Knowl. Based Syst., 2021)

Human drug-pathway association prediction based on network consistency projection. - Ali Ghulam; Xiujuan Lei; Yuchen Zhang 003; Zhenqiang Wu (Comput. Biol. Chem., 2022)

CircR2Disease v2.0: An Updated Web Server for Experimentally Validated circRNA-disease Associations and Its Application. - Chunyan Fan; Xiujuan Lei; Jiaojiao Tie; Yuchen Zhang 003; Fang-Xiang Wu; Yi Pan 001 (Genom. Proteom. Bioinform., 2022)

The prediction of molecular toxicity based on BiGRU and GraphSAGE. - Jianping Liu; Xiujuan Lei; Yuchen Zhang 003; Yi Pan 001 (Comput. Biol. Medicine, 2023)

Identify potential circRNA-disease associations through a multi-objective evolutionary algorithm. - Yuchen Zhang 003; Xiujuan Lei; Cai Dai; Yi Pan 001; Fang-Xiang Wu (Inf. Sci., 2023)

ICDFGF: Identification of potential circRNA-disease associations based on feature graph factorization. - Yuchen Zhang 003; Xiujuan Lei; Zhengfeng Wang; Yi Pan 001 (BCB, 2024)

Prediction of miRNA-Disease Associations Based on Hybrid Gated GNN and Multi-Data Integration. - Yeqiang Wang; Sharen Yun; Yuchen Zhang 003; Xiujuan Lei (BIBM, 2024)

Drug Combination Side Effect Prediction Based on Polypharmacy Network and GraphSAGE Algorithm. - Haiqiang Xiao; Xiujuan Lei; Yuchen Zhang 003; Fang-Xiang Wu (BIBM, 2024)