Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks. - Bian Li; Yucheng T. Yang; John A. Capra; Mark B. Gerstein (PLoS Comput. Biol., 2020)

GENCODE 2021. - Adam Frankish; Mark Diekhans; Irwin Jungreis; Julien Lagarde; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; Alexandra Bignell; et al. (Nucleic Acids Res., 2021)

Prioritizing genes associated with brain disorders by leveraging enhancer-promoter interactions in diverse neural cells and tissues. - Xingzhong Zhao; Yucheng T. Yang; Xing-Ming Zhao (BIBM, 2023)

Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes. - Shaoke Lou; Mingjun Yang; Tianxiao Li; Weihao Zhao; Hannah Cevasco; Yucheng T. Yang; Mark Gerstein (PLoS Comput. Biol., 2023)

GENCODE: reference annotation for the human and mouse genomes in 2023. - Adam Frankish; Silvia Carbonell Sala; Mark Diekhans; Irwin Jungreis; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Carme Arnan; If Barnes; Abhimanyu Banerjee; Ruth Bennett; et al. (Nucleic Acids Res., 2023)

Deciphering the genetic architecture of human brain structure and function: a brief survey on recent advances of neuroimaging genomics. - Xingzhong Zhao; Anyi Yang; Zi-Chao Zhang 001; Yucheng T. Yang; Xing-Ming Zhao (Briefings Bioinform., 2023)