Cluster learning-assisted directed evolution. - Yuchi Qiu; Jian Hu; Guo-Wei Wei 001 (Nat. Comput. Sci., 2021)

Multiple morphogens and rapid elongation promote segmental patterning during development. - Yuchi Qiu; Lianna Fung; Thomas F. Schilling; Qing Nie (PLoS Comput. Biol., 2021)

Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants. - Jiahui Chen 006; Yuchi Qiu; Rui Wang 072; Guo-Wei Wei 001 (Comput. Biol. Medicine, 2022)

CLADE 2.0: Evolution-Driven Cluster Learning-Assisted Directed Evolution. - Yuchi Qiu; Guo-Wei Wei 001 (J. Chem. Inf. Model., 2022)

Mathematics-assisted directed evolution and protein engineering. - Yuchi Qiu; Guo-Wei Wei 001 (CoRR, 2023)

Emerging Dominant SARS-CoV-2 Variants. - Jiahui Chen 006; Rui Wang 072; Yuta Hozumi; Gengzhuo Liu; Yuchi Qiu; Xiaoqi Wei; Guo-Wei Wei 001 (J. Chem. Inf. Model., 2023)

Persistent spectral theory-guided protein engineering. - Yuchi Qiu; Guo-Wei Wei 001 (Nat. Comput. Sci., 2023)

Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models. - Yuchi Qiu; Guo-Wei Wei 001 (Briefings Bioinform., 2023)

Reconstructing growth and dynamic trajectories from single-cell transcriptomics data. - Yutong Sha; Yuchi Qiu; Peijie Zhou; Qing Nie (Nat. Mac. Intell., 2024)

Publisher Correction: Reconstructing growth and dynamic trajectories from single-cell transcriptomics data. - Yutong Sha; Yuchi Qiu; Peijie Zhou; Qing Nie (Nat. Mac. Intell., 2024)