Microarray Standard Data Set and Figures of Merit for Comparing Data Processing Methods and Experiment Designs. - Yudong D. He; Hongyue Dai; Eric E. Schadt; Guy Cavet; Stephen W. Edwards; Sergey B. Stepaniants; Sven Duenwald; Robert Kleinhanz; Allan R. Jones; Daniel D. Shoemaker; Roland B. Stoughton (Bioinform., 2003)

A protocol for building and evaluating predictors of disease state based on microarray data. - Lodewyk F. A. Wessels; Marcel J. T. Reinders; Augustinus A. M. Hart; Cor J. Veenman; Hongyue Dai; Yudong D. He; Laura J. van't Veer (Bioinform., 2005)

Rosetta error model for gene expression analysis. - Lee Weng; Hongyue Dai; Yihui Zhan; Yudong D. He; Sergey B. Stepaniants; Douglas E. Bassett (Bioinform., 2006)

PPARα siRNA-Treated Expression Profiles Uncover the Causal Sufficiency Network for Compound-Induced Liver Hypertrophy. - Xudong Dai; Angus T. De Souza; Hongyue Dai; David L. Lewis; Chang-Kyu Lee; Andy G. Spencer; Hans Herweijer; Jim E. Hagstrom; Peter S. Linsley; Douglas E. Bassett; Roger G. Ulrich; Yudong D. He (PLoS Comput. Biol., 2007)