Herd Clustering: A synergistic data clustering approach using collective intelligence. - Ka-Chun Wong; Chengbin Peng 001; Yue Li 017; Tak-Ming Chan (Appl. Soft Comput., 2014)

A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information. - Yue Li 017; Anna Goldenberg; Ka-Chun Wong; Zhaolei Zhang (Bioinform., 2014)

Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion. - Yue Li 017; Cheng Liang 001; Ka-Chun Wong; Jiawei Luo 001; Zhaolei Zhang (Bioinform., 2014)

Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid Leukemia. - Yue Li 017; Minggao Liang; Zhaolei Zhang (PLoS Comput. Biol., 2014)

A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human. - Cheng Liang 001; Yue Li 017; Jiawei Luo 001; Zhaolei Zhang (Bioinform., 2015)

SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles. - Ka-Chun Wong; Yue Li 017; Chengbin Peng 001; Zhaolei Zhang (Bioinform., 2015)

Probabilistic Inference on Multiple Normalized Signal Profiles from Next Generation Sequencing: Transcription Factor Binding Sites. - Ka-Chun Wong; Chengbin Peng 001; Yue Li 017 (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Computational Methods of Inferring Context-specific MicroRNA Regulatory Networks. - Yue Li 017 (2015)

Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells. - Ka-Chun Wong; Yue Li 017; Chengbin Peng 001 (Bioinform., 2016)

A Novel Method to Detect Functional microRNA Regulatory Modules by Bicliques Merging. - Cheng Liang 001; Yue Li 017; Jiawei Luo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

A Comparison Study for DNA Motif Modeling on Protein Binding Microarray. - Ka-Chun Wong; Yue Li 017; Chengbin Peng 001; Hau-San Wong (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Evolving Transcription Factor Binding Site Models From Protein Binding Microarray Data. - Ka-Chun Wong; Chengbin Peng 001; Yue Li 017 (IEEE Trans. Cybern., 2017)

MiRGraph: A hybrid deep learning approach to identify microRNA-target interactions by integrating heterogeneous regulatory network and genomic sequences. - Pei Liu; Ying Liu 027; Jiawei Luo 001; Yue Li 017 (BIBM, 2024)