Raising the Compatibility of Heterogeneous Annotations: A Case Study on. - Yue Wang 040; Kazuhiro Yoshida; Jin-Dong Kim; Rune Saetre; Jun'ichi Tsujii (BioNLP, 2008)

Incorporating GENETAG-style annotation to GENIA corpus. - Tomoko Ohta; Jin-Dong Kim; Sampo Pyysalo; Yue Wang 040; Jun'ichi Tsujii (BioNLP@HLT-NAACL, 2009)

Investigating heterogeneous protein annotations toward cross-corpora utilization. - Yue Wang 040; Jin-Dong Kim; Rune Sætre; Sampo Pyysalo; Jun'ichi Tsujii (BMC Bioinform., 2009)

Improving the Inter-Corpora Compatibility for protein Annotations. - Yue Wang 040; Jin-Dong Kim; Rune Sætre; Sampo Pyysalo; Tomoko Ohta; Jun'ichi Tsujii (J. Bioinform. Comput. Biol., 2010)

Overview of Genia Event Task in BioNLP Shared Task 2011. - Jin-Dong Kim; Yue Wang 040; Toshihisa Takagi; Akinori Yonezawa (BioNLP@ACL (Shared Task), 2011)

CSAF - a community-sourcing annotation framework. - Jin-Dong Kim; Yue Wang 040 (LAW@ACL, 2012)

PubAnnotation - a persistent and sharable corpus and annotation repository. - Jin-Dong Kim; Yue Wang 040 (BioNLP@HLT-NAACL, 2012)

Boosting the protein name recognition performance by bootstrapping on selected text. - Yue Wang 040; Jin-Dong Kim (BioNLP@HLT-NAACL, 2012)

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011. - Jin-Dong Kim; Ngan L. T. Nguyen; Yue Wang 040; Jun'ichi Tsujii; Toshihisa Takagi; Akinori Yonezawa (BMC Bioinform., 2012)

The Genia Event Extraction Shared Task, 2013 Edition - Overview. - Jin-Dong Kim; Yue Wang 040; Yasunori Yamamoto (BioNLP@ACL (Shared Task), 2013)

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. - Toshiaki Katayama; Mark D. Wilkinson; Kiyoko F. Aoki-Kinoshita; Shuichi Kawashima; Yasunori Yamamoto; Atsuko Yamaguchi; Shinobu Okamoto; Shin Kawano; Jin-Dong Kim; Yue Wang 040; Hongyan Wu; Yoshinobu Kano; et al. (J. Biomed. Semant., 2014)

Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development. - Jin-Dong Kim; Yue Wang 040; Nicola Colic; Seung-Han Baek; Yong Hwan Kim; Min Song 001 (BioNLP (Shared Task), 2016)

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem. - Jin-Dong Kim; Yue Wang 040; Toyofumi Fujiwara; Shujiro Okuda; Tiffany J. Callahan; K. Bretonnel Cohen (Bioinform., 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)