An Improved Algorithm for Estimating the Distribution of RNA-related Genomic Features. - Jinge Wu; Lihan Zhang; Yuanzhe Wang; Jia Meng 001; Jionglong Su; Yue Wang 060 (BIBE, 2020)

MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis. - Yue Wang 060; Kunqi Chen; Zhen Wei; Frans Coenen; Jionglong Su; Jia Meng 001 (Bioinform., 2021)

RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. - Bowen Song; Xuan Wang; Zhanmin Liang; Jiongming Ma; Daiyun Huang; Yue Wang 060; João Pedro de Magalhães; Daniel J. Rigden; Jia Meng 001; Gang Liu; Kunqi Chen; Zhen Wei (Nucleic Acids Res., 2023)

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology. - Yuxin Zhang; Jie Jiang 020; Jiongming Ma; Zhen Wei; Yue Wang 060; Bowen Song; Jia Meng 001; Guifang Jia; João Pedro de Magalhães; Daniel J. Rigden; Daiyun Hang; Kunqi Chen (Nucleic Acids Res., 2023)

Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes. - Yiyou Song; Yue Wang 060; Xuan Wang; Daiyun Huang; Anh Nguyen; Jia Meng 001 (Briefings Bioinform., 2023)

Multimodal zero-shot learning of previously unseen epitranscriptomes from RNA-seq data. - Yiyou Song; Bowen Song; Daiyun Huang; Anh Nguyen; Lihong Hu; Jia Meng 001; Yue Wang 060 (Briefings Bioinform., 2025)