An Unconventional Method for Load Balancing. - Yuefan Deng; R. Alan McCoy; Robert B. Marr; Ronald F. Peierls (PP, 1995)

Analysis and prediction of hydrogen bonding in protein-DNA complexes using parallel processors. - Graham Campbell 004; Yuefan Deng; James Glimm; Yuan Wang; Qiqing Yu; Moisés Eisenberg; Arthur Grollman (J. Comput. Chem., 1996)

Decomposing 40 billion integers by four tetrahedral numbers. - Chung-Chiang Chou; Yuefan Deng (Math. Comput., 1997)

Numerical Solutions of a Nonlinear Evolution System with Small Dissipation on Parallel Processors. - Chung-Chiang Chou; Yuefan Deng (J. Sci. Comput., 1998)

Numerical Methods for Simulating Ginzburg-Landau Vortices. - Mo Mu; Yuefan Deng; Chung-Chiang Chou (SIAM J. Sci. Comput., 1998)

Parallel Particle Simulations of Thin-Film Deposition. - R. Alan McCoy; Yuefan Deng (Int. J. High Perform. Comput. Appl., 1999)

Approximate energy minimization for large Lennard-Jones clusters. - Yuefan Deng; Carlos Rivera (J. Glob. Optim., 2000)

The performance of a supercomputer built with commodity components. - Yuefan Deng; Alex Korobka (Parallel Comput., 2001)

New trends in high performance computing. - Osman Yasar; Yuefan Deng; Robert E. Tuzun; D. Saltz (Parallel Comput., 2001)

Performance Models on QCDOC for Molecular Dynamics with Coulomb Potentials. - Yuefan Deng; James Glimm; James W. Davenport; X. Cai; E. Santos (Int. J. High Perform. Comput. Appl., 2004)

Simulating botulinum neurotoxin with constant pH molecular dynamics in Generalized Born implicit solvent. - Yongzhi Chen; Xin Chen; Yuefan Deng (Comput. Phys. Commun., 2007)

Performance of the 3D FFT on the 6D network torus QCDOC parallel supercomputer. - Bin Fang; Yuefan Deng; Glenn J. Martyna (Comput. Phys. Commun., 2007)

A fine grained parallel smooth particle mesh Ewald algorithm for biophysical simulation studies: Application to the 6-D torus QCDOC supercomputer. - Bin Fang; Glenn J. Martyna; Yuefan Deng (Comput. Phys. Commun., 2007)

Error and timing analysis of multiple time-step integration methods for molecular dynamics. - Guowen Han; Yuefan Deng; James Glimm; Glenn J. Martyna (Comput. Phys. Commun., 2007)

An efficient parallel implementation of the smooth particle mesh Ewald method for molecular dynamics simulations. - Kwang Jin Oh; Yuefan Deng (Comput. Phys. Commun., 2007)

Electrostatic force computation for bio-molecules on supercomputers with torus networks. - Peter Rissland; Yuefan Deng (Parallel Comput., 2007)

Efficient Parallel Radiosity for Terascale Applications. - Riwei Wang; Hua Zhang; Yuefan Deng; Lei Ming (CSSE (2), 2008)

Task mapping on supercomputers with cellular networks. - Yongzhi Chen; Yuefan Deng (Comput. Phys. Commun., 2008)

A detailed analysis of communication load balance on BlueGene supercomputer. - Yongzhi Chen; Yuefan Deng (Comput. Phys. Commun., 2009)

Interlacing Bypass Rings to Torus Networks for More Efficient Networks. - Peng Zhang 006; Reid Powell; Yuefan Deng (IEEE Trans. Parallel Distributed Syst., 2011)

Simulated Performance Evaluation of a 6D Mesh/iBT Interconnect. - Rui Feng; Peng Zhang 006; Yuefan Deng (SNPD, 2012)

An analysis of the topological properties of the interlaced bypass torus (iBT) networks. - Peng Zhang 006; Yuefan Deng (Appl. Math. Lett., 2012)

Design and Analysis of Pipelined Broadcast Algorithms for the All-Port Interlaced Bypass Torus Networks. - Peng Zhang 006; Yuefan Deng (IEEE Trans. Parallel Distributed Syst., 2012)

Deadlock-Free Routing Algorithms for 6D Mesh/iBT Interconnection Networks. - Rui Feng; Peng Zhang 006; Yuefan Deng (SNPD, 2013)

Analysis of Linpack and power efficiencies of the world's TOP500 supercomputers. - Yuefan Deng; Peng Zhang 006; Carlos Marques; Reid Powell; Li Zhang (Parallel Comput., 2013)

Parameterizing the Morse potential for coarse-grained modeling of blood plasma. - Na Zhang; Peng Zhang 006; Wei Kang; Danny Bluestein; Yuefan Deng (J. Comput. Phys., 2014)

Eigenanalysis-based task mapping on parallel computers with cellular networks. - Peng Zhang 006; Yu-Xiang Gao; Janet Fierson; Yuefan Deng (Math. Comput., 2014)

Fariness of task scheduling in high performance computing environments. - Art Sedighi; Yuefan Deng; Peng Zhang 006 (Scalable Comput. Pract. Exp., 2014)

Investigation of Simulated Annealing Cooling Schedule for Mobile Recommendations. - Zeyang Ye; Keli Xiao; Yuefan Deng (ICDM Workshops, 2015)

Modeling Social Attention for Stock Analysis: An Influence Propagation Perspective. - Li Zhang; Keli Xiao; Qi Liu 003; Yefan Tao; Yuefan Deng (ICDM, 2015)

Performance examinations of multiple time-stepping algorithms on stampede supercomputer. - Na Zhang; Peng Zhang 006; Li Zhang; Xiao Zhu 002; Lei Huang 019; Yuefan Deng (XSEDE, 2015)

A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma. - Peng Zhang 006; Na Zhang; Yuefan Deng; Danny Bluestein (J. Comput. Phys., 2015)

A data-driven paradigm for mapping problems. - Peng Zhang 006; Ling Liu 005; Yuefan Deng (Parallel Comput., 2015)

Foreword. - Marek T. Michalewicz; Yuefan Deng (Supercomput. Front. Innov., 2015)

Creating interconnect topologies by algorithmic edge removal: MOD and SMOD graphs. - Marek T. Michalewicz; Lukasz Orlowski; Yuefan Deng (Supercomput. Front. Innov., 2015)

Evaluation of Various Networks Configurated by Adding Bypass or Torus Links. - Peng Zhang 006; Yuefan Deng; Rui Feng; Xingguo Luo; Jiangxing Wu (IEEE Trans. Parallel Distributed Syst., 2015)

Scalability Test of multiscale fluid-platelet model for three top supercomputers. - Peng Zhang 006; Na Zhang; Chao Gao; Li Zhang; Yu-Xiang Gao; Yuefan Deng; Danny Bluestein (Comput. Phys. Commun., 2016)

Symmetry-guided design of topologies for supercomputer networks. - Alexandre F. Ramos; Yuefan Deng (CoRR, 2017)

Reducing the effects of compressibility in DPD-based blood flow simulations through severe stenotic microchannels. - Chao Gao; Peng Zhang 006; Gil Marom; Yuefan Deng; Danny Bluestein (J. Comput. Phys., 2017)

A Unified Theory of the Mobile Sequential Recommendation Problem. - Zeyang Ye; Keli Xiao; Yuefan Deng (ICDM, 2018)

Multi-User Mobile Sequential Recommendation: An Efficient Parallel Computing Paradigm. - Zeyang Ye; Lihao Zhang; Keli Xiao; Wenjun Zhou 001; Yong Ge; Yuefan Deng (KDD, 2018)

Enumeration of regular graphs by using the cluster in high efficiency. - Zhipeng Xu; Xiaolong Huang; Yuefan Deng (CoRR, 2019)

Optimal Routing for a Family of Scalable Interconnection Networks. - Zhipeng Xu; Xiaolong Huang; Yuefan Deng (CoRR, 2019)

A Structured Table of Graphs with Special Properties. - Yidan Zhang; Xiaolong Huang; Zhipeng Xu; Yuefan Deng (CoRR, 2019)

Parallel MCMC methods for global optimization. - Lihao Zhang; Zeyang Ye; Yuefan Deng (Monte Carlo Methods Appl., 2019)

Applying Simulated Annealing and Parallel Computing to the Mobile Sequential Recommendation. - Zeyang Ye; Keli Xiao; Yong Ge; Yuefan Deng (IEEE Trans. Knowl. Data Eng., 2019)

A Structured Table of Graphs with Symmetries and Other Special Properties. - Yidan Zhang; Xiaolong Huang; Zhipeng Xu; Yuefan Deng (Symmetry, 2020)

Optimal low-latency network topologies for cluster performance enhancement. - Yuefan Deng; Meng Guo 004; Alexandre F. Ramos; Xiaolong Huang; Zhipeng Xu; Weifeng Liu (J. Supercomput., 2020)

Multi-User Mobile Sequential Recommendation for Route Optimization. - Keli Xiao; Zeyang Ye; Lihao Zhang; Wenjun Zhou 001; Yong Ge; Yuefan Deng (ACM Trans. Knowl. Discov. Data, 2020)

AGKD-BML: Defense Against Adversarial Attack by Attention Guided Knowledge Distillation and Bi-directional Metric Learning. - Hong Wang 024; Yuefan Deng; Shinjae Yoo; Haibin Ling; Yuewei Lin (ICCV, 2021)

Enabling AI-Accelerated Multiscale Modeling of Thrombogenesis at Millisecond and Molecular Resolutions on Supercomputers. - Yicong Zhu; Peng Zhang; Changnian Han; Guojing Cong; Yuefan Deng (ISC, 2021)

Rapid analysis of streaming platelet images by semi-unsupervised learning. - Ziji Zhang; Peng Zhang 006; Peineng Wang; Jawaad Sheriff; Danny Bluestein; Yuefan Deng (Comput. Medical Imaging Graph., 2021)

Artificial intelligence for accelerating time integrations in multiscale modeling. - Changnian Han; Peng Zhang 006; Danny Bluestein; Guojing Cong; Yuefan Deng (J. Comput. Phys., 2021)

Scalable multiscale modeling of platelets with 100 million particles. - Changnian Han; Peng Zhang; Yicong Zhu; Guojing Cong; James R. Kozloski; Chih-Chieh Yang; Leili Zhang; Yuefan Deng (J. Supercomput., 2022)

Optimal circulant graphs as low-latency network topologies. - Xiaolong Huang; Alexandre F. Ramos; Yuefan Deng (J. Supercomput., 2022)

Coarse-Grained Modeling of the SARS-CoV-2 Spike Glycoprotein by Physics-Informed Machine Learning. - David Liang; Ziji Zhang; Miriam Rafailovich; Marcia Simon; Yuefan Deng; Peng Zhang 006 (Comput., 2023)

AI-aided multiscale modeling of physiologically-significant blood clots. - Yicong Zhu; Changnian Han; Peng Zhang; Guojing Cong; James R. Kozloski; Chih-Chieh Yang; Leili Zhang; Yuefan Deng (Comput. Phys. Commun., 2023)

Learning coarse-grained force fields for fibrogenesis modeling. - Ziji Zhang; Georgios Kementzidis; Peng Zhang 006; Leili Zhang; James R. Kozloski; Adam Hansen; Miriam Rafailovich; Marcia Simon; Yuefan Deng (Comput. Phys. Commun., 2024)

Exploring Robust Features for Improving Adversarial Robustness. - Hong Wang 024; Yuefan Deng; Shinjae Yoo; Yuewei Lin (IEEE Trans. Cybern., 2024)

Discretization-invariance? On the Discretization Mismatch Errors in Neural Operators. - Wenhan Gao 002; Ruichen Xu; Yuefan Deng; Yi Liu 059 (ICLR, 2025)

Kolmogorov-Arnold Representation for Symplectic Learning: Advancing Hamiltonian Neural Networks. - Zongyu Wu; Ruichen Xu; Luoyao Chen; Georgios Kementzidis; Siyao Wang; Yuefan Deng (IJCNN, 2025)

An Iterative Framework for Generative Backmapping of Coarse Grained Proteins. - Georgios Kementzidis; Erin Wong; John Nicholson; Ruichen Xu; Yuefan Deng (CoRR, 2025)

A New Broadcast Model for Several Network Topologies. - Hongbo Lu; Junsung Hwang; Bernard Tenreiro; Nabila Jaman Tripti; Darren Hamilton; Yuefan Deng (CoRR, 2025)