Efficient Gene Community Search to Discover Similar Aspects for Similarity Explanation. - Zihao Chen; Lei Duan; Chengxin He; Yuening Qu; Yidan Zhang (BIBM, 2022)

DEAL: Construction of a Disease-aware Human Cell Knowledge Graph from Biomedicine Literature. - Min Fu; Lei Duan; Weipeng Jiang; Yuening Qu (BIBM, 2022)

MOVE: Integrating Multi-source Information for Predicting DTI via Cross-view Contrastive Learning. - Yuening Qu; Chengxin He; Jin Yin; Zhenjiang Zhao; Jingyu Chen; Lei Duan (BIBM, 2022)

Learning Temporal Graph Representation via Memory-Aware Autoencoder. - Jingyu Chen; Chengxin He; Yuening Qu; Zhenyang Yu; Yuanhao Zhang; Lei Duan (APWeb-WAIM (1), 2023)

SIDE: Sequence-Interaction-Aware Dual Encoder for Predicting circRNA Back-Splicing Events. - Chengxin He; Lei Duan; Huiru Zheng; Yuening Qu; Zhenyang Yu (BIBM, 2023)

DARE: Sequence-Structure Dual-Aware Encoder for RNA-Protein Binding Prediction. - Luhan Shen; Chengxin He; Haiying Wang; Yuening Qu; Lei Duan (BIBM, 2023)

MGDTI: Graph Transformer with Meta-Learning for Drug-Target Interaction Prediction. - Zhenjiang Zhao; Chengxin He; Yuening Qu; Huiru Zheng; Lei Duan; Jie Zuo (BIBM, 2023)