Hybrid PCA and LDA Analysis of Microarray Gene Expression Data. - Yijuan Lu; Qi Tian 001; Maribel Sanchez; Yufeng Wang 002 (CIBCB, 2005)

An Effective Algorithm for Breaking F5. - Hong Cai; Sos S. Agaian; Yufeng Wang 002 (MMSP, 2005)

Reverse Engineering Yeast Gene Regulatory Networks using Graphical Models. - Jiayin Wang; Yufei Huang 001; Maribel Sanchez; Yufeng Wang 002; Jianqiu (Michelle) Zhang (ICASSP (2), 2006)

A Self-supervised Learning Framework for Classifying Microarray Gene Expression Data. - Yijuan Lu; Qi Tian 001; Feng Liu; Maribel Sanchez; Yufeng Wang 002 (International Conference on Computational Science (2), 2006)

Pathway Complements of Four Yersinia. - Jennifer L. Neary; Maribel Sanchez; Yufeng Wang 002; Timothy G. Lilburn (BIBE, 2007)

Lineage Specific Expansion in Vibrio Species. - Jianying Gu; Jennifer L. Neary; Audrey Moshfeghian; Hong Cai; Sos S. Agaian; Timothy G. Lilburn; Yufeng Wang 002 (BIOCOMP, 2007)

Metabolic pathway complements of Five Francisella strains. - Jennifer L. Neary; Anthony Montanez; Timothy G. Lilburn; Yufeng Wang 002 (BIOCOMP, 2007)

Learning Microarray Gene Expression Data by Hybrid Discriminant Analysis. - Yijuan Lu; Qi Tian 001; Maribel Sanchez; Jennifer L. Neary; Feng Liu; Yufeng Wang 002 (IEEE Multim., 2007)

Bayesian Inference of Genetic Regulatory Networks from Time Series Microarray Data Using Dynamic Bayesian Networks. - Yufei Huang 001; Jianyin Wang; Jianqiu Zhang 002; Maribel Sanchez; Yufeng Wang 002 (J. Multim., 2007)

Interactive Semisupervised Learning for Microarray Analysis. - Yijuan Lu; Qi Tian 001; Feng Liu; Maribel Sanchez; Yufeng Wang 002 (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Constructing Gene Networks Using Variational Bayesian Variable Selection. - Isabel M. Tienda-Luna; Yufang Yin; Yufei Huang 001; Diego Pablo Ruiz Padillo; Maria Carmen Carrion Perez; Yufeng Wang 002 (Artif. Life, 2008)

Adaptive discriminant analysis for microarray-based classification. - Yijuan Lu; Qi Tian 001; Jennifer L. Neary; Feng Liu; Yufeng Wang 002 (ACM Trans. Knowl. Discov. Data, 2008)

Putative Cell Cycle Related Genes in Plasmodium Falciparum. - Hong Cai; Maribel Sanchez; Yufeng Wang 002; Jianying Gu (IJCBS, 2009)

Genome Evolution in Malaria Parasites: I. Core Genome Components. - Hong Cai; Yufeng Wang 002; Jianying Gu (IJCBS, 2009)

Variation in the Predicted Biosynthetic Capabilities of Seven Vibrionaceae. - Jennifer L. Neary; Yufeng Wang 002; Timothy G. Lilburn (IJCBS, 2009)

Reverse engineering gene regulatory networks. - Yufei Huang 001; Isabel M. Tienda-Luna; Yufeng Wang 002 (IEEE Signal Process. Mag., 2009)

Geometrical modification of wavelet SVM kernels and its application in microarray analysis. - Hong Cai; Yufeng Wang 002 (GENSiPS, 2011)

Transcriptomic analysis using SVD clustering and SVM classification. - Hong Cai; Yufeng Wang 002 (GENSiPS, 2011)

ECF sigma factor-associated regulatory networks in Streptomyces colicolor A3(2). - Zhan Zhou; Qi Li; Julie Tudyk; Yong-Quan Li; Yufeng Wang 002 (GENSiPS, 2011)

Prediction of novel systems components in cell cycle regulation in malaria parasite by subnetwork alignments. - Hong Cai; Changjin Hong; Jianying Gu; Timothy G. Lilburn; Rui Kuang; Yufeng Wang 002 (BIBM, 2012)

Genome plasticity and systems evolution in Streptomyces. - Zhan Zhou; Jianying Gu; Yong-Quan Li; Yufeng Wang 002 (BMC Bioinform., 2012)

Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum. - Hong Cai; Changjin Hong; Jianying Gu; Timothy G. Lilburn; Rui Kuang; Yufeng Wang 002 (BMC Syst. Biol., 2012)

Network analysis reveals complex interactions in heat shock response in the malaria parasite. - Timothy G. Lilburn; Hong Cai; Jianying Gu; Zhan Zhou; Yufeng Wang 002 (BIBM, 2013)

A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum. - Hong Cai; Changjin Hong; Timothy G. Lilburn; Armando L. Rodriguez; Sheng Chen; Jianying Gu; Rui Kuang; Yufeng Wang 002 (BMC Bioinform., 2013)

Heavy path mining reveals novel protein-protein associations in the malaria parasite plasmodium falciparum. - Xinran Yu; Turgay Korkmaz; Timothy G. Lilburn; Hong Cai; Jianying Gu; Yufeng Wang 002 (BIBM, 2014)

Exploring systems affected by the heat shock response in Plasmodium falciparum via protein association networks. - Timothy G. Lilburn; Hong Cai; Jianying Gu; Zhan Zhou; Yufeng Wang 002 (Int. J. Comput. Biol. Drug Des., 2014)

Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments. - Hong Cai; Timothy G. Lilburn; Changjin Hong; Jianying Gu; Rui Kuang; Yufeng Wang 002 (BMC Syst. Biol., 2015)

Just-in-time expression of influential genes in the cellular networks of the malaria parasite Plasmodium falciparum during the red blood cycle. - Xinran Yu; Hao Zhang; Timothy G. Lilburn; Hong Cai; Jianying Gu; Turgay Korkmaz; Yufeng Wang 002 (BIBM, 2016)

PageRank influence analysis of protein-protein association networks in the malaria parasite Plasmodium falciparum. - Xinran Yu; Timothy G. Lilburn; Hong Cai; Jianying Gu; Turgay Korkmaz; Yufeng Wang 002 (Int. J. Comput. Biol. Drug Des., 2017)

Transcriptomic and network analyses combine to identify genes that drive the red blood cell cycle of Plasmodium falciparum. - Xinran Yu; Hao Zhang; Timothy G. Lilburn; Hong Cai; Jianying Gu; Turgay Korkmaz; Yufeng Wang 002 (Int. J. Data Min. Bioinform., 2017)