Generation of Attributes for Learning Algorithms. - Yuh-Jyh Hu; Dennis F. Kibler (AAAI/IAAI, Vol. 1, 1996)

Constructive Induction: A Preprocessor. - Yuh-Jyh Hu (AI, 1996)

Learning Different Types of New Attributes by Combining the Neural Network and Iterative Attribute Construction. - Yuh-Jyh Hu (ECML, 1997)

Detecting Motifs from Sequences. - Yuh-Jyh Hu; Suzanne B. Sandmeyer; Dennis F. Kibler (ICML, 1999)

Global Gene Expression Analysis with genetic Programming. - Yuh-Jyh Hu (GECCO, 2000)

Analyzing gene behaviors with genetic computation. - Yuh-Jyh Hu (KES, 2000)

Combinatorial motif analysis and hypothesis generation on a genomic scale. - Yuh-Jyh Hu; Suzanne B. Sandmeyer; Calvin McLaughlin; Dennis F. Kibler (Bioinform., 2000)

Biological Sequence Data Mining. - Yuh-Jyh Hu (PKDD, 2001)

An integrated approach for genome-wide gene expression analysis. - Yuh-Jyh Hu (Comput. Methods Programs Biomed., 2001)

Mining A Set of Coregulated RNA Sequences. - Yuh-Jyh Hu (ICDM, 2002)

The NCTU BioInfo Archive of biological data sets for bioinformatics research and experimentation. - Yuh-Jyh Hu (Bioinform., 2002)

Using functionally important sites to identify orthologous relations. - Hsuan-Chao Chiu; Yuh-Jyh Hu (ISMSE, 2003)

Reconstruct transcription networks by combining gene expression correlations with TF binding sites. - Ying-Zhe Hsu; Yuh-Jyh Hu (ISMSE, 2003)

Finding subtle motifs with variable gaps in unaligned DNA sequences. - Yuh-Jyh Hu (Comput. Methods Programs Biomed., 2003)

GPRM: a genetic programming approach to finding common RNA secondary structure elements. - Yuh-Jyh Hu (Nucleic Acids Res., 2003)

A Site-Based Method for Prediction of Protein Orthologous Relations. - Hsuan-Chao Chiu; Yuh-Jyh Hu (METMBS, 2004)

A Combinatorial Approach to Reconstructing Transcriptional Regulatory Networks. - Ying-Zhe Hsu; Yuh-Jyh Hu (METMBS, 2004)

RNA Clustering and Secondary Structure Prediction. - Yuh-Jyh Hu (METMBS, 2005)

Prediction of orthologous relationship by functionally important sites. - Hsuan-Chao Chiu; C. Allen Chang; Yuh-Jyh Hu (Comput. Methods Programs Biomed., 2005)

A Multi-strategy Approach to Protein Structural Alphabet Design. - Shih-Yen Ku; Yuh-Jyh Hu (BIOCOMP, 2006)

Bicluster Analysis of Genome-Wide Gene Expression. - Kuanchung Chen; Yuh-Jyh Hu (CIBCB, 2006)

A Two-stage Approach to Finding Common Structure Elements in Unaligned RNA Sequences. - Chiyang Huang; Yuh-Jyh Hu (BIOCOMP, 2007)

Using Protein Structural Alphabet to Characterize Local Structure Features. - Shih-Yen Ku; Yuh-Jyh Hu (BIOCOMP, 2008)

Evolutionary conservation of DNA-contact residues in DNA-binding domains. - Yao-Lin Chang; Huai-Kuang Tsai; Cheng-Yan Kao; Yung-Chiang Chen; Yuh-Jyh Hu; Jinn-Moon Yang (BMC Bioinform., 2008)

Protein structure search and local structure characterization. - Shih-Yen Ku; Yuh-Jyh Hu (BMC Bioinform., 2008)

Discovery of Structural Motifs in Metalloproteins Using Protein Structural Alphabets and 1D Motif-finding Methods. - Shih-Yen Ku; Chih-Ying Wei; Yuh-Jyh Hu (BIOCOMP, 2009)

SA-Motifbase: A Database of Protein Structural Alphabet Motifs. - Shih-Yen Ku; Yuh-Jyh Hu (BIOCOMP, 2010)

Extracting the abstraction pyramid from complex networks. - Chia-Ying Cheng; Yuh-Jyh Hu (BMC Bioinform., 2010)

Analysis of Patient Controlled Analgesia Demand Patterns. - Yuh-Jyh Hu; Rong-Hong Jan; Kuochen Wang; Yu-Chee Tseng; Tien-Hsiung Ku; Shu-Fen Yang (ICDM (Poster and Industry Proceedings), 2011)

An Efficient Cluster-Based Data Dissemination Scheme in Wireless Sensor Networks. - Ren-Jhong Liu; Kuochen Wang; Tien-Hsiung Ku; Rong-Hong Jan; Yuh-Jyh Hu (VTC Spring, 2011)

Pattern discovery from patient controlled analgesia demand behavior. - Yuh-Jyh Hu; Tien-Hsiung Ku (Comput. Biol. Medicine, 2012)

Structural alphabet motif discovery and a structural motif database. - Shih-Yen Ku; Yuh-Jyh Hu (Comput. Biol. Medicine, 2012)

Decision tree-based learning to predict patient controlled analgesia consumption and readjustment. - Yuh-Jyh Hu; Tien-Hsiung Ku; Rong-Hong Jan; Kuochen Wang; Yu-Chee Tseng; Shu-Fen Yang (BMC Medical Informatics Decis. Mak., 2012)

iPCA: an integration information system for patient controlled analgesia using wireless techniques. - Shu-Fen Yang; Tien-Hsiung Ku; Andy An-Kai Jeng; Rong-Hong Jan; Yu-Chee Tseng; Kuochen Wang; Yuh-Jyh Hu (Int. J. Ad Hoc Ubiquitous Comput., 2013)

A Fast Window-based Scalar Multiplication Algorithm for Elliptic Curve Cryptography in Wireless Sensor Networks. - Hung-Nan Ye; Kuochen Wang; Rong-Hong Jan; Yuh-Jyh Hu; Yu-Chee Tseng; Yi-Huai Hsu (ICS, 2014)

Applying Stacked and Cascade Generalizations to B-cell Epitope Prediction. - Yuh-Jyh Hu; Shun-Chien Lin; Yu-Lung Lin (IWBBIO, 2014)

A meta-learning approach for B-cell conformational epitope prediction. - Yuh-Jyh Hu; Shun-Chien Lin; Yu-Lung Lin; Kuan-Hui Lin; Shun-Ning You (BMC Bioinform., 2014)

A Two-Stage Learning Method for Response Prediction. - Kuan-Hsi Chen; Zih-Yun Ting; Jia-Ying Shen; Yuh-Jyh Hu; Tyne Liang (ICDM Workshops, 2015)

A Similarity-Based Learning Algorithm Using Distance Transformation. - Yuh-Jyh Hu; Min-Che Yu; Hsiang-An Wang; Zih-Yun Ting (IEEE Trans. Knowl. Data Eng., 2015)

A meta decision tree approach for B-cell epitope mining. - Yuh-Jyh Hu; Shun-Ning You (CIBCB, 2016)

Prediction of Patient-Controlled Analgesic Consumption: A Multimodel Regression Tree Approach. - Yuh-Jyh Hu; Tien-Hsiung Ku; Yu-Hung Yang; Jia-Ying Shen (IEEE J. Biomed. Health Informatics, 2018)

Protein-protein interaction prediction using a hybrid feature representation and a stacked generalization scheme. - Kuan-Hsi Chen; Tsai-Feng Wang; Yuh-Jyh Hu (BMC Bioinform., 2019)

A Grid-based Simulation Model for the Evolution of Influenza A Viruses. - Hsin-Ting Chung; Yuh-Jyh Hu (BIOINFORMATICS, 2020)