A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy. - Yukako Tohsato; Hideo Matsuda; Akihiro Hashimoto (ISMB, 2000)

An Application of a Pathway Alignment Method to Comparative Analysis between Genome and Pathways. - Shoko Miyake; Yukako Tohsato; Hideo Matsuda (CSB, 2002)

Clustering Method for Comparative Analysis between Genomes and Pathways. - Shoko Miyake; Yukako Tohsato; Yoichi Takenaka; Hideo Matsuda (DASFAA, 2003)

Heterogeneous Database Federation Using Grid Technology for Drug Discovery Process. - Yukako Tohsato; Takahiro Kosaka; Susumu Date; Shinji Shimojo; Hideo Matsuda (LSGRID, 2004)

A Method for Species Comparison of Metabolic Networks Using Reaction Profile. - Yukako Tohsato (Inf. Media Technol., 2007)

Metabolic Pathway Alignment Based on Similarity between Chemical Structures. - Yukako Tohsato; Yu Nishimura (Inf. Media Technol., 2008)

Reaction Similarities Focusing Substructure Changes of Chemical Compounds and Metabolic Pathway Alignments. - Yukako Tohsato; Yu Nishimura (Inf. Media Technol., 2009)

Prediction of protein phosphorylation sites by support vector machines. - Tomoki Ishino; Ikuko Nishikawa; Yukako Tohsato; Satoshi Fukuchi; Ken Nishikawa (BMEI, 2013)

ECOH: An Enzyme Commission number predictor using mutual information and a support vector machine. - Yoshihiko Matsuta; Masahiro Ito; Yukako Tohsato (Bioinform., 2013)

Nuclear detection in 4D microscope images using enhanced probability map of top-ranked intensity-ordered descriptors. - Xian-Hua Han; Yukako Tohsato; Koji Kyoda; Shuichi Onami; Ikuko Nishikawa; Yen-Wei Chen 001 (ACPR, 2015)

Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data. - Koji Kyoda; Yukako Tohsato; Kenneth H. L. Ho; Shuichi Onami (Bioinform., 2015)

GenoBase: comprehensive resource database of Escherichia coli K-12. - Yuta Otsuka; Ai Muto; Rikiya Takeuchi; Chihiro Okada; Motokazu Ishikawa; Koichiro Nakamura; Natsuko Yamamoto; Hitomi Dose; Kenji Nakahigashi; Shigeki Tanishima; Sivasundaram Suharnan; Wataru Nomura; et al. (Nucleic Acids Res., 2015)

SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena. - Yukako Tohsato; Kenneth H. L. Ho; Koji Kyoda; Shuichi Onami (Bioinform., 2016)

Nuclear detection in 4D microscope images of a developing embryo using an enhanced probability map of top-ranked intensity-ordered descriptors. - Xian-Hua Han; Yukako Tohsato; Koji Kyoda; Shuichi Onami; Ikuko Nishikawa; Yen-Wei Chen 001 (IPSJ Trans. Comput. Vis. Appl., 2016)

Phenotype Analysis Method for Identification of Gene Functions Involved in Asymmetric Division of Caenorhabditis elegans. - Sihai Yang; Xian-Hua Han; Yukako Tohsato; Koji Kyoda; Shuichi Onami; Ikuko Nishikawa; Yen-Wei Chen 001 (J. Comput. Biol., 2017)

Characterizing Phenotype Abnormality by Variational Auto Encoder. - Yuki Kimura; Takaya Ueda; Seo Masataka; Yukako Tohsato; Ikuko Nishikawa (ICNC-FSKD, 2019)

Analysis of Time Series Anomalies Using Causal InfoGAN and Its Application to Biological Data. - Takaya Ueda; Masataka Seo; Yukako Tohsato; Ikuko Nishikawa (ICNC-FSKD, 2019)

Temporal Anomaly Detection by Deep Generative Models with Applications to Biological Data. - Takaya Ueda; Yukako Tohsato; Ikuko Nishikawa (ICANN (1), 2020)

Phenotype Anomaly Detection for Biological Dynamics Data Using a Deep Generative Model. - Eisuke Ito; Takaya Ueda; Ryo Takano; Yukako Tohsato; Koji Kyoda; Shuichi Onami; Ikuko Nishikawa (ICANN (2), 2022)

Unsupervised Domain Adaptation Using Temporal Association for Segmentation and Its Application to C. elegans Time-Lapse Images. - Hiroaki Nozaki; Yukako Tohsato (ICANN (3), 2022)

Large-scale Image Processing and Three-Dimensional Reconstruction of Mouse Brains with Neurogenic-Tagged Neurons. - Hiroto Kawabata; Yuki Shimojo; Tatsumi Hirata; Yukako Tohsato (ICBET, 2023)

Gene Deletion Algorithms for Minimum Reaction Network Design by Mixed-Integer Linear Programming for Metabolite Production in Constraint-Based Models: gDel_minRN. - Takeyuki Tamura; Ai Muto-fujita; Yukako Tohsato; Tomoyuki Kosaka (J. Comput. Biol., 2023)