COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. - Takeshi Obayashi; Yuki Kagaya; Yuichi Aoki; Shu Tadaka; Kengo Kinoshita (Nucleic Acids Res., 2019)

MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry. - Genki Terashi; Yuki Kagaya; Daisuke Kihara (J. Chem. Inf. Model., 2020)

Protein contact map refinement for improving structure prediction using generative adversarial networks. - Sai Raghavendra Maddhuri Venkata Subramaniya; Genki Terashi; Aashish Jain; Yuki Kagaya; Daisuke Kihara (Bioinform., 2021)

ContactPFP: Protein Function Prediction Using Predicted Contact Information. - Yuki Kagaya; Sean Flannery; Aashish Jain; Daisuke Kihara (Frontiers Bioinform., 2022)

A Critical Pair Criterion for Level-Commutation of Conditional Term Rewriting Systems. - Ryota Haga; Yuki Kagaya; Takahito Aoto 001 (FroCoS, 2023)

COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. - Takeshi Obayashi; Shun Kodate; Himiko Hibara; Yuki Kagaya; Kengo Kinoshita (Nucleic Acids Res., 2023)

SHREC2024: Non-rigid Complementary Shapes Retrieval in Protein-protein Interactions. - Taher Yacoub; Nika Zarubina; Camille Depenveiller; Hoang-Phuc Nguyen; Vinh-Toan Vong; Minh-Triet Tran; Yuki Kagaya; Tsukasa Nakamura; Daisuke Kihara; Florent Langenfeld; Matthieu Montès (3DOR (Short Papers), 2024)