Implementation of Memory Tester Consisting of SRAM-Based Reconfigurable Cells. - Yuki Yamagata; Kenichi Ichino; Masayuki Arai; Satoshi Fukumoto; Kazuhiko Iwasaki; Masayuki Satoh; Hiroyuki Itabashi; Takashi Murai; Nobuyuki Otsuka (Asian Test Symposium, 2003)

FREX: A query interface for biological processes with hierarchical and recursive structures. - Ken-ichiro Fukuda; Yuki Yamagata; Toshihisa Takagi (Silico Biol., 2003)

River Flow Model of Diseases. - Riichiro Mizoguchi; Kouji Kozaki; Hiroko Kou; Yuki Yamagata; Takeshi Imai; Kayo Waki; Kazuhiko Ohe (ICBO, 2011)

Ontological Modeling of Interoperable Abnormal States. - Yuki Yamagata; Hiroko Kou; Kouji Kozaki; Riichiro Mizoguchi; Takeshi Imai; Kazuhiko Ohe (JIST, 2012)

Browsing Causal Chains in a Disease Ontology. - Kouji Kozaki; Hiroko Kou; Yuki Yamagata; Takeshi Imai; Kazuhiko Ohe; Riichiro Mizoguchi (ISWC (Posters & Demos), 2012)

Ontological Model of Abnormal States and its Application in the Medical Domain. - Yuki Yamagata; Hiroko Kou; Kouji Kozaki; Riichiro Mizoguchi; Takeshi Imai; Kazuhiko Ohe (ICBO, 2013)

Publishing a Disease Ontologies as Linked Data. - Kouji Kozaki; Yuki Yamagata; Takeshi Imai; Kazuhiko Ohe; Riichiro Mizoguchi (JIST, 2013)

Towards the Integration of Abnormality in Diseases. - Yuki Yamagata; Kouji Kozaki; Takeshi Imai; Kazuhiko Ohe; Riichiro Mizoguchi (ICBO, 2014)

An ontological modeling approach for abnormal states and its application in the medical domain. - Yuki Yamagata; Kouji Kozaki; Takeshi Imai; Kazuhiko Ohe; Riichiro Mizoguchi (J. Biomed. Semant., 2014)

Disease Compass - a navigation system for disease knowledge based on ontology and linked data techniques. - Kouji Kozaki; Yuki Yamagata; Riichiro Mizoguchi; Takeshi Imai; Kazuhiko Ohe (ICBO, 2015)

An Evaluation of Burst Transfer Inferred by a High-level Synthesis Tool. - Yuki Yamagata; Akira Yamawaki 002 (TENCON, 2018)

TXPO: A Toxic Process Ontology for Better Understanding of Drug-Induced Liver Injury. - Yuki Yamagata; Yoshinobu Igarashi; Noriyuki Nakatsu; Hiroshi Yamada (ICBO, 2019)

Development of Filled Circle Drawing in High-Level Synthesis Oriented Game Programming Library. - Yuki Yamagata; Akira Yamawaki 002 (PDCAT, 2019)

A performance evaluation of read/write burst transfer by high-level synthesizable software for the alpha blending processing. - Yuki Yamagata; Akira Yamawaki 002 (Artif. Life Robotics, 2020)

A Community Effort for COVID-19 Ontology Harmonization. - Asiyah Yu Lin; Yuki Yamagata; William D. Duncan; Leigh C. Carmody; Tatsuya Kushida; Hiroshi Masuya; John Beverley; Biswanath Dutta; Michael DeBellis; Zoë May Pendlington; Paola Roncaglia; Yongqun He (ICBO, 2021)

Ontology Integration for Discovering Bioresources Contributing to Medical Science Research. - Tatsuya Kushida; Daiki Usuda; Toyoyuki Takada; Yuki Yamagata; Hiroshi Masuya (ICBO, 2022)

Knowledge Systematization for Cellular Senescence Processes by Homeostasis Imbalance Process Ontology. - Yuki Yamagata; Shuichi Onami; Hiroshi Masuya (ICBO, 2022)

Mention-Agnostic Information Extraction for Ontological Annotation of Biomedical Articles. - Oumaima El Khettari; Noriki Nishida; Shanshan Liu; Rumana Ferdous Munne; Yuki Yamagata; Solen Quiniou; Samuel Chaffron; Yuji Matsumoto 001 (BioNLP@ACL, 2024)

Homeostasis imbalance process ontology: a study on COVID-19 infectious processes. - Yuki Yamagata; Tatsuya Kushida; Shuichi Onami; Hiroshi Masuya (BMC Medical Informatics Decis. Mak., 2024)

Zero-Shot Entailment Learning for Ontology-Based Biomedical Annotation Without Explicit Mentions. - Rumana Ferdous Munne; Noriki Nishida; Shanshan Liu; Narumi Tokunaga; Yuki Yamagata; Kouji Kozaki; Yuji Matsumoto 001 (COLING, 2025)

A Semantic Web-Based Infrastructure for Purpose-Driven Retrieval of Life Science Bioresources. - Tatsuya Kushida; Daiki Usuda; Masanobu Yamagata; Norio Kobayashi; Shoichiro Shindo; Tatsuya Yamada; Yuki Yamagata; Hiroshi Masuya (ISWC (Industry/Doctoral Consortium/Posters/Demos), 2025)

SSBD Ontology: A Two-Tier Approach for Interoperable Bioimaging Metadata. - Yuki Yamagata; Koji Kyoda; Hiroya Itoga; Emi Fujisawa; Shuichi Onami (ISWC (2), 2025)

MA-COIR: Leveraging Semantic Search Index and Generative Models for Ontology-Driven Biomedical Concept Recognition. - Shanshan Liu; Noriki Nishida; Rumana Ferdous Munne; Narumi Tokunaga; Yuki Yamagata; Kouji Kozaki; Yuji Matsumoto 001 (CoRR, 2025)