A sparse adaptive filtering using time-varying soft-thresholding techniques. - Yukihiro Murakami; Masao Yamagishi; Masahiro Yukawa; Isao Yamada (ICASSP, 2010)

Polynomial-Time Algorithms for Phylogenetic Inference Problems. - Leo van Iersel; Remie Janssen; Mark Jones 001; Yukihiro Murakami; Norbert Zeh (AlCoB, 2018)

Rooting for phylogenetic networks. - Katharina T. Huber; Leo van Iersel; Remie Janssen; Mark Jones 001; Vincent Moulton; Yukihiro Murakami; Charles Semple (CoRR, 2019)

Combining Networks Using Cherry Picking Sequences. - Remie Janssen; Mark Jones 001; Yukihiro Murakami (AlCoB, 2020)

Linear Time Algorithm for Tree-Child Network Containment. - Remie Janssen; Yukihiro Murakami (AlCoB, 2020)

Reconstructibility of unrooted level-k phylogenetic networks from distances. - Leo van Iersel; Vincent Moulton; Yukihiro Murakami (Adv. Appl. Math., 2020)

Recognizing and realizing cactus metrics. - Momoko Hayamizu; Katharina T. Huber; Vincent Moulton; Yukihiro Murakami (Inf. Process. Lett., 2020)

Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulation. - Leo van Iersel; Remie Janssen; Mark Jones 001; Yukihiro Murakami; Norbert Zeh (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

A unifying characterization of tree-based networks and orchard networks using cherry covers. - Leo van Iersel; Remie Janssen; Mark Jones 001; Yukihiro Murakami; Norbert Zeh (Adv. Appl. Math., 2021)

On cherry-picking and network containment. - Remie Janssen; Yukihiro Murakami (Theor. Comput. Sci., 2021)

On Phylogenetic Encodings and Orchard Networks. - Yukihiro Murakami (2021)

A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees. - Leo van Iersel; Remie Janssen; Mark Jones 001; Yukihiro Murakami; Norbert Zeh (Algorithmica, 2022)

Level-2 networks from shortest and longest distances. - Katharina T. Huber; Leo van Iersel; Remie Janssen; Mark Jones 001; Vincent Moulton; Yukihiro Murakami (Discret. Appl. Math., 2022)

Making a Network Orchard by Adding Leaves. - Leo van Iersel; Mark Jones 001; Esther Julien; Yukihiro Murakami (WABI, 2023)

Orienting undirected phylogenetic networks to tree-child network. - Shunsuke Maeda; Yusuke Kaneko; Hideaki Muramatsu; Yukihiro Murakami; Momoko Hayamizu (CoRR, 2023)

Polynomial invariants for cactuses. - Leo van Iersel; Vincent Moulton; Yukihiro Murakami (Inf. Process. Lett., 2023)

Resolving Unresolved Resolved and Unresolved Triplets Consistency Problems. - Daniel J. Harvey; Jesper Jansson 001; Mikolaj Marciniak; Yukihiro Murakami (IWOCA, 2024)

A Wild Sheep Chase Through an Orchard. - Jordan Dempsey; Leo van Iersel; Mark Jones 001; Yukihiro Murakami; Norbert Zeh (CoRR, 2024)

A near-linear kernel for bounded-state parsimony distance. - Elise Deen; Leo van Iersel; Remie Janssen; Mark Jones 001; Yukihiro Murakami; Norbert Zeh (J. Comput. Syst. Sci., 2024)

Orienting undirected phylogenetic networks. - Katharina T. Huber; Leo van Iersel; Remie Janssen; Mark Jones 001; Vincent Moulton; Yukihiro Murakami; Charles Semple (J. Comput. Syst. Sci., 2024)

The Burning Number Conjecture is True for Trees without Degree-2 Vertices. - Yukihiro Murakami (Graphs Comb., 2024)

Metrics for classes of semi-binary phylogenetic networks using μ-representations. - Christopher Reichling; Leo van Iersel; Yukihiro Murakami (Adv. Appl. Math., 2026)