Inference of gene regulatory Networks by Maximum-likelihood adaptive filtering and discrete fish School Search. - Yukun Tan; Fernando B. Lima Neto; Ulisses M. Braga-Neto (MLSP, 2018)

Inference of Protein-Protein Interaction Networks from Liquid-Chromatography Mass-Spectrometry Data by Approximate Bayesian Computation-Sequential Monte Carlo Sampling. - Yukun Tan; Fernando B. Lima Neto; Ulisses M. Braga-Neto (MLSP, 2020)

A stochastic metapopulation state-space approach to modeling and estimating Covid-19 spread. - Yukun Tan; Durward Cator III; Martial L. Ndeffo Mbah; Ulisses M. Braga-Neto (CoRR, 2021)

PALLAS: Penalized mAximum LikeLihood and pArticle Swarms for Inference of Gene Regulatory Networks From Time Series Data. - Yukun Tan; Fernando B. Lima Neto; Ulisses M. Braga-Neto (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

KCLab at Chemotimelines 2024: End-to-end system for chemotherapy timeline extraction - Subtask2. - Yukun Tan; Merve Dede; Ken Chen 001 (ClinicalNLP@NAACL, 2024)

Forecasting acute kidney injury and resource utilization in ICU patients using longitudinal, multimodal models. - Yukun Tan; Merve Dede; Vakul Mohanty; Jinzhuang Dou; Holly Hill; Elmer V. Bernstam; Ken Chen 001 (J. Biomed. Informatics, 2024)