Evolution of multiple phosphodiesterase isoforms in stickleback involved in cAMP signal transduction pathway. - Yukuto Sato; Yasuyuki Hashiguchi; Mutsumi Nishida (BMC Syst. Biol., 2009)

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads. - Kaname Kojima; Naoki Nariai; Takahiro Mimori; Mamoru Takahashi; Yumi Yamaguchi-Kabata; Yukuto Sato; Masao Nagasaki (Bioinform., 2013)

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data. - Takahiro Mimori; Naoki Nariai; Kaname Kojima; Mamoru Takahashi; Akira Ono; Yukuto Sato; Yumi Yamaguchi-Kabata; Masao Nagasaki (BMC Syst. Biol., 2013)

HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads. - Kaname Kojima; Naoki Nariai; Takahiro Mimori; Yumi Yamaguchi-Kabata; Yukuto Sato; Yosuke Kawai; Masao Nagasaki (AlCoB, 2014)

SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints. - Tomohiko Ohtsuki; Naoki Nariai; Kaname Kojima; Takahiro Mimori; Yukuto Sato; Yosuke Kawai; Yumi Yamaguchi-Kabata; Tetsuo Shibuya; Masao Nagasaki (AlCoB, 2014)

Estimating copy numbers of alleles from population-scale high-throughput sequencing data. - Takahiro Mimori; Naoki Nariai; Kaname Kojima; Yukuto Sato; Yosuke Kawai; Yumi Yamaguchi-Kabata; Masao Nagasaki (BMC Bioinform., 2015)

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data. - Naoki Nariai; Kaname Kojima; Sakae Saito; Takahiro Mimori; Yukuto Sato; Yosuke Kawai; Yumi Yamaguchi-Kabata; Jun Yasuda; Masao Nagasaki (BMC Genom., 2015)