A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites. - Ivan V. Kulakovskiy; A. A. Belostotsky; Artem S. Kasianov; Natalia G. Esipova; Yulia A. Medvedeva; I. A. Eliseeva; Vsevolod J. Makeev (Bioinform., 2011)

Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. - Alexander V. Favorov; Loris Mularoni; Leslie M. Cope; Yulia A. Medvedeva; Andrey A. Mironov; Vsevolod J. Makeev; Sarah J. Wheelan (PLoS Comput. Biol., 2012)

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models. - Ivan V. Kulakovskiy; Yulia A. Medvedeva; Ulf Schaefer; Artem S. Kasianov; Ilya E. Vorontsov; Vladimir B. Bajic; Vsevolod J. Makeev (Nucleic Acids Res., 2013)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

EpiFactors: a comprehensive database of human epigenetic factors and complexes. - Yulia A. Medvedeva; Andreas Lennartsson; Rezvan Ehsani; Ivan V. Kulakovskiy; Ilya E. Vorontsov; Pouda Panahandeh; Grigory Khimulya; Takeya Kasukawa; Finn Drabløs (Database J. Biol. Databases Curation, 2015)

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. - Ivan V. Kulakovskiy; Ilya E. Vorontsov; Ivan S. Yevshin; Anastasiia V. Soboleva; Artem S. Kasianov; Haitham Ashoor; Wail Ba-alawi; Vladimir B. Bajic; Yulia A. Medvedeva; Fedor A. Kolpakov; Vsevolod J. Makeev (Nucleic Acids Res., 2016)

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. - Marina Lizio; Jayson Harshbarger; Imad Abugessaisa; Shuei Noguchi; Atsushi Kondo; Jessica Severin; Chris Mungall; David J. Arenillas; Anthony Mathelier; Yulia A. Medvedeva; Andreas Lennartsson; Finn Drabløs; et al. (Nucleic Acids Res., 2017)

ASSA: Fast identification of statistically significant interactions between long RNAs. - Ivan Antonov; Andrey Marakhonov; Maria Zamkova; Yulia A. Medvedeva (J. Bioinform. Comput. Biol., 2018)

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis. - Ivan V. Kulakovskiy; Ilya E. Vorontsov; Ivan S. Yevshin; Ruslan N. Sharipov; Alla D. Fedorova; Eugene I. Rumynskiy; Yulia A. Medvedeva; Arturo Magana-Mora; Vladimir B. Bajic; Dmitri A. Papatsenko; Fedor A. Kolpakov; Vsevolod J. Makeev (Nucleic Acids Res., 2018)

Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools. - Ivan V. Antonov; Evgeny Mazurov; Mark Borodovsky; Yulia A. Medvedeva (Briefings Bioinform., 2019)

Building a Platform-Type Business Model to Form an Omnichannel Integration in the Telecommunications Industry. - Irina Krasyuk; Valery Leventsov; Maria Kolgan; Yulia A. Medvedeva (NEW2AN/ruSMART (2), 2020)

Transforming the Strategic Benchmarks of Russian Telecommunications Companies in the Sustainable Development Paradigm. - Irina Krasyuk; Oksana Evseeva; Maria Kolgan; Yulia A. Medvedeva (NEW2AN/ruSMART, 2021)

Increasing the Competitiveness of Info-Telecommunications Enterprises Through Building a Mobile Eco-system. - Irina Krasyuk; Valery Leventsov; Olga Kartavenko; Maria Kolgan; Yulia A. Medvedeva (NEW2AN/ruSMART, 2021)

EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes. - Daria Marakulina; Ilya E. Vorontsov; Ivan V. Kulakovskiy; Andreas Lennartsson; Finn Drabløs; Yulia A. Medvedeva (Nucleic Acids Res., 2023)

scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting. - Pavel Akhtyamov; Layal Shaheen; Mikhail Raevskiy; Alexey Stupnikov; Yulia A. Medvedeva (Briefings Bioinform., 2023)