Chemical Similarity Assessment through Multilevel Neighborhoods of Atoms: Definition and Comparison with the Other Descriptors. - Dmitrii Filimonov; Vladimir Poroikov; Yulia V. Borodina; Tatyana Gloriozova (J. Chem. Inf. Comput. Sci., 1999)

Robustness of Biological Activity Spectra Predicting by Computer Program PASS for Noncongeneric Sets of Chemical Compounds. - Vladimir Poroikov; Dmitrii Filimonov; Yulia V. Borodina; A. A. Lagunin; A. Kos (J. Chem. Inf. Comput. Sci., 2000)

Predicting Biotransformation Potential from Molecular Structure. - Yulia V. Borodina; A. Sadym; Dmitrii Filimonov; V. Blinova; Alexander V. Dmitriev; Vladimir Poroikov (J. Chem. Inf. Comput. Sci., 2003)

PASS Biological Activity Spectrum Predictions in the Enhanced Open NCI Database Browser. - Vladimir Poroikov; Dmitrii Filimonov; Wolf-Dietrich Ihlenfeldt; Tatyana Gloriozova; Alexey Lagunin; Yulia V. Borodina; Alla Stepanchikova; Marc C. Nicklaus (J. Chem. Inf. Comput. Sci., 2003)

A New Statistical Approach to Predicting Aromatic Hydroxylation Sites. Comparison with Model-Based Approaches. - Yulia V. Borodina; Anastasia V. Rudik; Dmitrii Filimonov; N. Kharchevnikova; Alexander V. Dmitriev; V. Blinova; Vladimir Poroikov (J. Chem. Inf. Model., 2004)

Assessment of Conformational Ensemble Sizes Necessary for Specific Resolutions of Coverage of Conformational Space. - Yulia V. Borodina; Evan Bolton; Fabien Fontaine; Stephen H. Bryant (J. Chem. Inf. Model., 2007)

PDB Ligand Conformational Energies Calculated Quantum-Mechanically. - Markus Sitzmann; Iwona E. Weidlich; Igor V. Filippov; Chenzhong Liao; Megan L. Peach; Wolf-Dietrich Ihlenfeldt; Rajeshri G. Karki; Yulia V. Borodina; Raul E. Cachau; Marc C. Nicklaus (J. Chem. Inf. Model., 2012)