Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction. - Sarah von Löhneysen; Thomas Spicher; Yuliia Varenyk; Hua-Ting Yao; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler (ISBRA, 2023)

Modified RNAs and predictions with the ViennaRNA Package. - Yuliia Varenyk; Thomas Spicher; Ivo L. Hofacker; Ronny Lorenz (Bioinform., 2023)

Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. - Sarah von Löhneysen; Thomas Spicher; Yuliia Varenyk; Hua-Ting Yao; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler (J. Comput. Biol., 2024)