mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code. - Yuliya V. Karpievitch; Jonas S. Almeida (BMC Bioinform., 2006)

PrepMS: TOF MS data graphical preprocessing tool. - Yuliya V. Karpievitch; Elizabeth G. Hill; Adam J. Smolka; Jeffrey S. Morris; Kevin R. Coombes; Keith A. Baggerly; Jonas S. Almeida (Bioinform., 2007)

A statistical framework for protein quantitation in bottom-up MS-based proteomics. - Yuliya V. Karpievitch; Jeff Stanley; Thomas Taverner; Jianhua Huang; Joshua N. Adkins; Charles Ansong; Fred Heffron; Thomas O. Metz; Wei-Jun Qian; Hyunjin Yoon; Richard D. Smith; Alan R. Dabney (Bioinform., 2009)

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition. - Yuliya V. Karpievitch; Thomas Taverner; Joshua N. Adkins; Stephen J. Callister; Gordon A. Anderson; Richard D. Smith; Alan R. Dabney (Bioinform., 2009)

DanteR: an extensible R-based tool for quantitative analysis of -omics data. - Thomas Taverner; Yuliya V. Karpievitch; Ashoka D. Polpitiya; Joseph N. Brown; Alan R. Dabney; Gordon A. Anderson; Richard D. Smith (Bioinform., 2012)

Normalization and missing value imputation for label-free LC-MS analysis. - Yuliya V. Karpievitch; Alan R. Dabney; Richard D. Smith (BMC Bioinform., 2012)

Review of Machine Learning Algorithms in Differential Expression Analysis. - Irina Kuznetsova; Yuliya V. Karpievitch; Aleksandra Filipovska; Artur Lugmayr; Andreas Holzinger (CoRR, 2017)

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions. - Akanksha Srivastava; Yuliya V. Karpievitch; Steven R. Eichten; Justin O. Borevitz; Ryan Lister (BMC Bioinform., 2019)

Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow. - Alphons Gwatimba; Joseph Ho; Thomas Iosifidis; Yuliya V. Karpievitch (J. Open Source Softw., 2022)