Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU. - Yuma Munekawa; Fumihiko Ino; Kenichi Hagihara (BIBE, 2008)

Harnessing the Power of Idle GPUs for Acceleration of Biological Sequence Alignment. - Fumihiko Ino; Yuki Kotani; Yuma Munekawa; Kenichi Hagihara (Parallel Process. Lett., 2009)

Accelerating Smith-Waterman Algorithm for Biological Database Search on CUDA-Compatible GPUs. - Yuma Munekawa; Fumihiko Ino; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2010)

Sequence Homology Search Using Fine Grained Cycle Sharing of Idle GPUs. - Fumihiko Ino; Yuma Munekawa; Kenichi Hagihara (IEEE Trans. Parallel Distributed Syst., 2012)