Comparison of Different Missing-Imputation Methods for MAIAC (Multiangle Implementation of Atmospheric Correction) AOD in Estimating Daily PM2.5 Levels. - Zhao-Yue Chen; Jie-Qi Jin; Rong Zhang; Tian-Hao Zhang; Jin-Jian Chen; Jun Yang 042; Chun-Quan Ou; Yuming Guo 001 (Remote. Sens., 2020)

Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations. - Yue Bi; Fuyi Li; Xudong Guo; Zhikang Wang; Tong Pan; Yuming Guo 001; Geoffrey I. Webb; Jianhua Yao 001; Cangzhi Jia; Jiangning Song (Briefings Bioinform., 2022)

RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins. - Xinxin Peng; Xiaoyu Wang 016; Yuming Guo 001; Zongyuan Ge; Fuyi Li; Xin Gao 001; Jiangning Song (Briefings Bioinform., 2022)

Boosting the prediction of molten steel temperature in ladle furnace with a dynamic outlier ensemble. - Biao Wang; Wenjing Wang; Guanglei Meng; Zhihua Qiao; Yuming Guo 001; Na Wang; Wei Wang; Zhizhong Mao (Eng. Appl. Artif. Intell., 2022)

A Large-Scale Dataset of Conservation and Deep Tillage in Mollisols, Northeast Plain, China. - Fahui Jiang; Shangshu Huang; Yan Wu; Mahbub Ul Islam; Fangjin Dong; Zhen Cao; Guohui Chen; Yuming Guo 001 (Data, 2023)

Selective Feature Bagging of one-class classifiers for novelty detection in high-dimensional data. - Biao Wang; Wenjing Wang; Guanglei Meng; Tiankuo Meng; Bin Song; Yingnan Wang; Yuming Guo 001; Zhihua Qiao; Zhizhong Mao (Eng. Appl. Artif. Intell., 2023)

SMG: self-supervised masked graph learning for cancer gene identification. - Yan Cui 008; Zhikang Wang; Xiaoyu Wang 016; Yiwen Zhang; Ying Zhang 053; Tong Pan; Zhe Zhang; Shanshan Li; Yuming Guo 001; Tatsuya Akutsu; Jiangning Song (Briefings Bioinform., 2023)

MULGA, a unified multi-view graph autoencoder-based approach for identifying drug-protein interaction and drug repositioning. - Jiani Ma; Chen Li 021; Yiwen Zhang; Zhikang Wang; Shanshan Li; Yuming Guo 001; Lin Zhang 015; Hui Liu 024; Xin Gao 001; Jiangning Song (Bioinform., 2023)

Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images. - Zhikang Wang; Qian Gao; Xiaoping Yi; Xinyu Zhang 017; Yiwen Zhang; Daokun Zhang; Pietro Liò; Chris Bain; Richard Bassed; Shanshan Li; Yuming Guo 001; Seiya Imoto; et al. (Comput. Methods Programs Biomed., 2023)

Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues. - Ying Zhang 053; Zhikang Wang; Yiwen Zhang; Shanshan Li; Yuming Guo 001; Jiangning Song; Dong-Jun Yu (Bioinform., 2023)

Deep learning approaches for non-coding genetic variant effect prediction: current progress and future prospects. - Xiaoyu Wang 016; Fuyi Li; Yiwen Zhang; Seiya Imoto; Hsin-Hui Shen; Shanshan Li; Yuming Guo 001; Jian Yang 005; Jiangning Song (Briefings Bioinform., 2024)

MLSNet: a deep learning model for predicting transcription factor binding sites. - Yuchuan Zhang; Zhikang Wang; Fang Ge; Xiaoyu Wang 016; Yiwen Zhang; Shanshan Li; Yuming Guo 001; Jiangning Song; Dong-Jun Yu (Briefings Bioinform., 2024)

GraphormerDTI: A graph transformer-based approach for drug-target interaction prediction. - Mengmeng Gao; Daokun Zhang; Yi Chen; Yiwen Zhang; Zhikang Wang; Xiaoyu Wang 016; Shanshan Li; Yuming Guo 001; Geoffrey I. Webb; Anh T. N. Nguyen; Lauren T. May; Jiangning Song (Comput. Biol. Medicine, 2024)

PmxPred: A data-driven approach for the identification of active polymyxin analogues against gram-negative bacteria. - Xiaoyu Wang 016; Nitin Patil; Fuyi Li; Zhikang Wang; Haolan Zhan; Daniel Schmidt; Philip Thompson; Yuming Guo 001; Cornelia B. Landersdorfer; Hsin-Hui Shen; Anton Y. Peleg; Jian Li 052; et al. (Comput. Biol. Medicine, 2024)

Multimodal geometric learning for antimicrobial peptide identification by leveraging alphafold2-predicted structures and surface features. - Zehua Sun; Jing Xu 008; Yumeng Zhang; Yiwen Zhang; Zhikang Wang; Xiaoyu Wang 016; Shanshan Li; Yuming Guo 001; Hsin Hui Shen; Jiangning Song (Briefings Bioinform., 2025)

Supervised contrastive learning enhances MHC-II peptide binding affinity prediction. - Long-Chen Shen; Yan Liu 038; Zi Liu; Yumeng Zhang; Zhikang Wang; Yuming Guo 001; Jamie Rossjohn; Jiangning Song; Dong-Jun Yu (Expert Syst. Appl., 2025)

Structure-Directed Pan-Specific T-Cell Receptor-Peptide-Major Histocompatibility Complex Interaction Prediction. - Letao Gao; Yumeng Zhang; Fang Ge; Shanshan Li; Yuming Guo 001; Jiangning Song; Dong-Jun Yu (J. Chem. Inf. Model., 2025)