SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes. - Junhui Qiu; Qi Zhou; Weicai Ye; Qianjun Chen; Yun-Juan Bao (BMC Bioinform., 2022)

A pathway-based computational framework for identification of a new modal of multi-omics biomarkers and its application in esophageal cancer. - Qi Zhou; Weicai Ye; Xiaolan Yu; Yun-Juan Bao (Comput. Methods Programs Biomed., 2024)

Network-based multi-omics integrative analysis methods in drug discovery: a systematic review. - Wei Jiang; Weicai Ye; Xiaoming Tan; Yun-Juan Bao (BioData Min., 2025)