Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains. - Yao-Lin Chang; Huai-Kuang Tsai; Cheng-Yan Kao; Yung-Chiang Chen; Jinn-Moon Yang (IMSCCS, 2007)

3D-partner: a web server to infer interacting partners and binding models. - Yung-Chiang Chen; Yu-Shu Lo; Wen-Chang Hsu; Jinn-Moon Yang (Nucleic Acids Res., 2007)

Evolutionary conservation of DNA-contact residues in DNA-binding domains. - Yao-Lin Chang; Huai-Kuang Tsai; Cheng-Yan Kao; Yung-Chiang Chen; Yuh-Jyh Hu; Jinn-Moon Yang (BMC Bioinform., 2008)

3D-interologs: A Protein-Protein Interacting Evolution Database across Multiple Species. - Jinn-Moon Yang; Yung-Chiang Chen; Yu-Shu Lo (IJCBS, 2009)

Inferring homologous protein-protein interactions through pair position specific scoring matrix. - Chun-Yu Lin 003; Yung-Chiang Chen; Yu-Shu Lo; Jinn-Moon Yang (BMC Bioinform., 2013)