Fast Computation of Human Genetic Linkage. - Hongling Wang; Alberto Maria Segre; Yungui Huang; Jeffrey R. O'Connell; Veronica J. Vieland (BIBE, 2007)

Poster: High-performance computing for mapping disease-related genes. - William Valentine-Cooper; Yungui Huang; Sang-Cheol Seok; Veronica J. Vieland (ICCABS, 2011)

Evaluation of a Machine Learning Method to Rank PubMed Central Articles For Clinical Relevancy: NCH at TREC 2016 Clinical Decision Support Track. - Wei Chen; Soheil Moosavinasab; Steve Rust; Yungui Huang; Simon M. Lin; Anna Zemke; Ariana Prinzbach (TREC, 2016)

'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities. - Soheil Moosavinasab; Jeremy A. Patterson; Robert Strouse; Majid Rastegar-Mojarad; Kelly Regan; Philip R. O. Payne; Yungui Huang; Simon M. Lin (Database J. Biol. Databases Curation, 2016)

Vitals Risk Index: A Simplified Pediatric Early Warning Index that Relies Solely on Objective Measures. - Tyler Gorham; Steven W. Rust; Jing Yang; James Lin; Richard Hoyt; Swan Bee Liu; Jeffrey Hoffman; Tensing Maa; Yungui Huang; Simon M. Lin (AMIA, 2017)

Genome Dashboard: An Interactive Tool for the Exploration of Human Genomic Variants and Phenotypic Associations. - Katherine Miller; Rajeswari Swaminathan; Soheil Moosavinasab; Robert Strouse; Matthew Bailey 002; Yungui Huang; Simon M. Lin (AMIA, 2017)

DeepSuggest: Query Expansion for Clinical Notes by Deep Learning. - Emre Sezgin; Koushik Jinna; Tran Bourgeois; Soheil Moosavinasab; Yungui Huang; Simon M. Lin (AMIA, 2017)

Sharing exome sequencing data between Clinical Sequencing Labs and Healthcare Providers. - Rajeswari Swaminathan; Yungui Huang; Katherine Miller; Matthew Pastore; Sayaka Hashimoto; Theodora Jacobson; Danielle Mouhlas; Simon M. Lin (AMIA, 2017)

Clinical exome sequencing reports: current informatics practice and future opportunities. - Rajeswari Swaminathan; Yungui Huang; Caroline Astbury; Sara Fitzgerald-Butt; Katherine Miller; Justin Cole; Christopher W. Bartlett; Simon M. Lin (J. Am. Medical Informatics Assoc., 2017)

Simplified Readability Metric Drives Improvement of Radiology Reports: an Experiment on Ultrasound Reports at a Pediatric Hospital. - Wei Chen; Claire Durkin; Yungui Huang; Brent Adler; Steve Rust; Simon M. Lin (J. Digit. Imaging, 2017)

Variation in After-hours EHR Usage among Ambulatory Care Physicians. - Selasi Attipoe; Yungui Huang; Sharon B. Schweikhart; Simon M. Lin (AMIA, 2018)

Char2Vec: Learning the Semantic Embedding of Rare and Unseen Words in the Biomedical Literature. - Syed-Amad A. Hussain; Soheil Moosavinasab; Emre Sezgin; Yungui Huang; Simon M. Lin (AMIA, 2018)

DeepChild: Hospitalization Prediction via Neural Network. - Xianlong Zeng; Soheil Moosavinasab; Enju Lin; Yungui Huang; Chang Liu 028; Simon M. Lin (AMIA, 2018)

Phrase2VecGLM: Neural generalized language model-based semantic tagging for complex query reformulation in medical IR. - Manirupa Das; Eric Fosler-Lussier; Simon M. Lin; Soheil Moosavinasab; David Chen; Steve Rust; Yungui Huang; Rajiv Ramnath (BioNLP, 2018)

Identifying Candidates for Medical Coding Audits: Demonstration of a Data Driven Approach to Improve Medicare Severity Diagnosis-Related Group Coding Compliance. - Yunyi Feng; Simon M. Lin; Enju Lin; Lesley Farley; Yungui Huang; Chang Liu 028 (HIS, 2019)

SurfCon: Synonym Discovery on Privacy-Aware Clinical Data. - Zhen Wang 041; Xiang Yue; Soheil Moosavinasab; Yungui Huang; Simon M. Lin; Huan Sun 001 (KDD, 2019)

Sequence-to-Set Semantic Tagging: End-to-End Multi-label Prediction using Neural Attention for Complex Query Reformulation and Automated Text Categorization. - Manirupa Das; Juanxi Li; Eric Fosler-Lussier; Simon M. Lin; Soheil Moosavinasab; Steve Rust; Yungui Huang; Rajiv Ramnath (CoRR, 2019)

Tasks Associated With Extreme After-hours EHR Use Among Ambulatory Care Pediatricians. - Selasi Attipoe; Yungui Huang; Sharon B. Schweikhart; Jennifer L. Hefner; Daniel M. Walker; Steven W. Rust; Jeffrey Hoffman; Simon M. Lin (AMIA, 2020)

Clinical Phrase Mining with Language Models. - Kaushik Mani; Xiang Yue; Bernal Jimenez Gutierrez; Yungui Huang; Simon M. Lin; Huan Sun 001 (BIBM, 2020)

Sequence-to-Set Semantic Tagging for Complex Query Reformulation and Automated Text Categorization in Biomedical IR using Self-Attention. - Manirupa Das; Juanxi Li; Eric Fosler-Lussier; Simon M. Lin; Steve Rust; Yungui Huang; Rajiv Ramnath (BioNLP, 2020)

Graph embedding on biomedical networks: methods, applications and evaluations. - Xiang Yue; Zhen Wang 041; Jingong Huang; Srinivasan Parthasarathy 001; Soheil Moosavinasab; Yungui Huang; Simon M. Lin; Wen Zhang 008; Ping Zhang 016; Huan Sun 001 (Bioinform., 2020)

Readiness for voice assistants to support healthcare delivery during a health crisis and pandemic. - Emre Sezgin; Yungui Huang; Ujjwal Ramtekkar; Simon Lin (npj Digit. Medicine, 2020)