Predicting protein-protein interactions by weighted pseudo amino acid composition. - Yunus Emre Göktepe; Ilhan Ilhan; Sirzat Kahramanli (Int. J. Data Min. Bioinform., 2016)

Prediction of Protein-Protein Interactions Using An Effective Sequence Based Combined Method. - Yunus Emre Göktepe; Halife Kodaz (Neurocomputing, 2018)

Yapay zekâ tekniklerinin kullanımıyla protein etkileşimlerinin sekans bilgisine dayalı tahmini (Prediction of protein interactions by using artificial intelligence techniques based on protein sequence data) - Yunus Emre Göktepe (2019)

Protein-protein interaction prediction using enhanced features with spaced conjoint triad and amino acid pairwise distance. - Yunus Emre Göktepe (PeerJ Comput. Sci., 2025)

IDDLE: A Novel Deep Learning-Based Approach for Intrusion Detection Problem Using Feature Extraction. - Yunus Emre Göktepe; Yusuf Uzun (Secur. Priv., 2025)