A study of effect of N-back and arithmetic mental workload on performance of P300-Speller. - Yuqian Chen; Yufeng Ke; Guifang Meng; Hongzhi Qi; Feng He 005; Peng Zhou 001; Dong Ming (iCAST, 2015)

Concurrent mental activities affect ERPs and impair performance of ERP-spellers. - Yufeng Ke; Peiyuan Wang; Yuqian Chen; Bin Gu 002; Hongzhi Qi; Peng Zhou 001; Dong Ming (NER, 2015)

Enhancing performance of P300-Speller under mental workload by incorporating dual-task data during classifier training. - Yuqian Chen; Yufeng Ke; Guifang Meng; Jin Jiang; Hongzhi Qi; Xuejun Jiao; Minpeng Xu; Peng Zhou 001; Feng He 005; Dong Ming (Comput. Methods Programs Biomed., 2017)

Celltrack R-CNN: A Novel End-To-End Deep Neural Network For Cell Segmentation And Tracking In Microscopy Images. - Yuqian Chen; Yang Song 001; Chaoyi Zhang; Fan Zhang 013; Lauren O'Donnell; Wojciech Chrzanowski; Weidong Cai 001 (ISBI, 2021)

Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation. - Yuqian Chen; Chaoyi Zhang; Yang Song 001; Nikos Makris; Yogesh Rathi; Weidong Cai 001; Fan Zhang 013; Lauren J. O'Donnell (MICCAI (7), 2021)

Supwma: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning. - Tengfei Xue; Fan Zhang 013; Chaoyi Zhang; Yuqian Chen; Yang Song 001; Nikos Makris; Yogesh Rathi; Weidong Cai 001; Lauren J. O'Donnell (ISBI, 2022)

White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning. - Yuqian Chen; Fan Zhang 013; Chaoyi Zhang; Tengfei Xue; Leo R. Zekelman; Jianzhong He; Yang Song 001; Nikos Makris; Yogesh Rathi; Alexandra J. Golby; Weidong Cai 001; Lauren J. O'Donnell (MICCAI (1), 2022)

DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation. - Yuqian Chen; Chaoyi Zhang; Tengfei Xue; Yang Song 001; Nikos Makris; Yogesh Rathi; Tom Weidong Cai; Fan Zhang 013; Lauren J. O'Donnell (CoRR, 2022)

A Novel Supervised Contrastive Regression Framework for Prediction of Neurocognitive Measures Using Multi-Site Harmonized Diffusion MRI Tractography. - Tengfei Xue; Fan Zhang 013; Leo R. Zekelman; Chaoyi Zhang; Yuqian Chen; Suheyla Cetin Karayumak; Steven D. Pieper; William M. Wells III; Yogesh Rathi; Nikos Makris; Weidong Cai 001; Lauren J. O'Donnell (CoRR, 2022)

White matter association tracts underlying language and theory of mind: An investigation of 809 brains from the Human Connectome Project. - Leo R. Zekelman; Fan Zhang 013; Nikos Makris; Jianzhong He; Yuqian Chen; Tengfei Xue; Daniela Liera; Daniel L. Drane; Yogesh Rathi; Alexandra J. Golby; Lauren J. O'Donnell (NeuroImage, 2022)

TNDA-HAR. - Yan Yan 022; Dali Chen; Yushi Liu 001; Jinjin Zhao; Bo Wang; Xuankun Wu; Xiaohao Jiao; Yuqian Chen; Huihui Li; Xuchao Ren (IEEE DataPort, 2022)

Tractgraphcnn: Anatomically Informed Graph CNN for Classification Using Diffusion MRI Tractography. - Yuqian Chen; Fan Zhang 013; Leo R. Zekelman; Tengfei Xue; Chaoyi Zhang; Yang Song 001; Nikos Makris; Yogesh Rathi; Weidong Cai 001; Lauren J. O'Donnell (ISBI, 2023)

DEEPRGVP: A novel microstructure-informed supervised contrastive learning framework for automated identification of the retinogeniculate pathway using dMRI tractography. - Sipei Li; Jianzhong He; Tengfei Xue; Guoqiang Xie; Shun Yao; Yuqian Chen; Erickson F. Torio; Yuanjing Feng; Dhiego Chaves de Almeida Bastos; Yogesh Rathi; Nikos Makris; Ron Kikinis; et al. (ISBI, 2023)

Tractography-Based Parcellation of Cerebellar Dentate Nuclei via a Deep Nonnegative Matrix Factorization Clustering Method. - Xiao Xu; Yuqian Chen; Leo R. Zekelman; Yogesh Rathi; Nikos Makris; Fan Zhang 013; Lauren J. O'Donnell (ISBI, 2023)

A Deep Network for Explainable Prediction of Non-imaging Phenotypes Using Anatomical Multi-view Data. - Yuxiang Wei 004; Yuqian Chen; Tengfei Xue; Leo R. Zekelman; Nikos Makris; Yogesh Rathi; Weidong Cai 001; Fan Zhang 013; Lauren J. O'Donnell (CDMRI@MICCAI, 2023)

TractCloud: Registration-Free Tractography Parcellation with a Novel Local-Global Streamline Point Cloud Representation. - Tengfei Xue; Yuqian Chen; Chaoyi Zhang; Alexandra J. Golby; Nikos Makris; Yogesh Rathi; Weidong Cai 001; Fan Zhang 013; Lauren J. O'Donnell (MICCAI (8), 2023)

Fiber Tract Shape Measures Inform Prediction of Non-Imaging Phenotypes. - Wan Liu 001; Yuqian Chen; Chuyang Ye; Nikos Makris; Yogesh Rathi; Weidong Cai 001; Fan Zhang 013; Lauren J. O'Donnell (CoRR, 2023)

Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions. - Tengfei Xue; Fan Zhang 013; Chaoyi Zhang; Yuqian Chen; Yang Song 001; Alexandra J. Golby; Nikos Makris; Yogesh Rathi; Weidong Cai 001; Lauren J. O'Donnell (Medical Image Anal., 2023)

Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation. - Yuqian Chen; Chaoyi Zhang; Tengfei Xue; Yang Song 001; Nikos Makris; Yogesh Rathi; Tom Weidong Cai; Fan Zhang 013; Lauren J. O'Donnell (NeuroImage, 2023)

A Novel Deep Clustering Framework for Fine-Scale Parcellation of Amygdala Using DMRI Tractography. - Haolin He; Ce Zhu; Le Zhang 001; Yipeng Liu 001; Xiao Xu; Yuqian Chen; Leo R. Zekelman; Jarrett Rushmore; Yogesh Rathi; Nikos Makris; Lauren J. O'Donnell; Fan Zhang 013 (ISBI, 2024)

Cross-Domain Fiber Cluster Shape Analysis for Language Performance Cognitive Score Prediction. - Yui Lo; Yuqian Chen; Dongnan Liu; Wan Liu 001; Leo R. Zekelman; Fan Zhang 013; Yogesh Rathi; Nikos Makris; Alexandra J. Golby; Weidong Cai 001; Lauren J. O'Donnell (CDMRI@MICCAI, 2024)

TractGraphFormer: Anatomically Informed Hybrid Graph CNN-Transformer Network for Classification from Diffusion MRI Tractography. - Yuqian Chen; Fan Zhang 013; Meng Wang; Leo R. Zekelman; Suheyla Cetin Karayumak; Tengfei Xue; Chaoyi Zhang; Yang Song 001; Nikos Makris; Yogesh Rathi; Tom Weidong Cai; Lauren J. O'Donnell (CoRR, 2024)

Deep multimodal saliency parcellation of cerebellar pathways: linking microstructure and individual function through explainable multitask learning. - Ari Tchetchenian; Leo R. Zekelman; Yuqian Chen; Jarrett Rushmore; Fan Zhang 013; Edward H. Yeterian; Nikos Makris; Yogesh Rathi; Erik Meijering; Yang Song 001; Lauren J. O'Donnell (CoRR, 2024)

White Matter Geometry-Guided Score-Based Diffusion Model for Tissue Microstructure Imputation in Tractography Imaging. - Yui Lo; Yuqian Chen; Fan Zhang 013; Dongnan Liu; Leo R. Zekelman; Suheyla Cetin Karayumak; Yogesh Rathi; Tom Weidong Cai; Lauren J. O'Donnell (CoRR, 2024)

The shape of the brain's connections is predictive of cognitive performance: an explainable machine learning study. - Yui Lo; Yuqian Chen; Dongnan Liu; Wan Liu 001; Leo R. Zekelman; Jarrett Rushmore; Fan Zhang 013; Yogesh Rathi; Nikos Makris; Alexandra J. Golby; Weidong Cai 001; Lauren J. O'Donnell (CoRR, 2024)

TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. - Yuqian Chen; Leo R. Zekelman; Chaoyi Zhang; Tengfei Xue; Yang Song 001; Nikos Makris; Yogesh Rathi; Alexandra J. Golby; Weidong Cai 001; Fan Zhang 013; Lauren J. O'Donnell (Medical Image Anal., 2024)

NTIRE 2025 Challenge on Day and Night Raindrop Removal for Dual-Focused Images: Methods and Results. - Xin Li 082; Yeying Jin; Xin Jin; Zongwei Wu; Bingchen Li; Yufei Wang; Wenhan Yang; Yu Li; Zhibo Chen 001; Bihan Wen; Robby T. Tan; Radu Timofte; et al. (CVPR Workshops, 2025)

Medical Image Registration Meets Vision Foundation Model: Prototype Learning and Contour Awareness. - Hao Xu 042; Tengfei Xue; Jianan Fan; Dongnan Liu; Yuqian Chen; Fan Zhang 013; Carl-Fredrik Westin; Ron Kikinis; Lauren J. O'Donnell; Weidong Cai 001 (IPMI (1), 2025)

Dineuro: Distilling Knowledge from 2D Natural Images via Deformable Tubular Transferring Strategy for 3D Neuron Reconstruction. - Yik San Cheng; Runkai Zhao; Heng Wang 007; Hanchuan Peng; Yui Lo; Yuqian Chen; Lauren J. O'Donnell; Weidong Cai 001 (ISBI, 2025)

TractShapeNet: Efficient Multi-Shape Learning with 3D Tractography Point Clouds. - Yui Lo; Yuqian Chen; Dongnan Liu; Jon Haitz Legarreta; Leo R. Zekelman; Fan Zhang 013; Jarrett Rushmore; Yogesh Rathi; Nikos Makris; Alexandra J. Golby; Tom Weidong Cai; Lauren J. O'Donnell (ISBI, 2025)

A Novel Deep Learning Tractography Fiber Clustering Framework for Functionally Consistent White Matter Parcellation Using Multimodal Diffusion MRI and Functional MRI. - Jin Wang; Bocheng Guo; Yijie Li; Junyi Wang; Yuqian Chen; Jarrett Rushmore; Nikos Makris; Yogesh Rathi; Lauren J. O'Donnell; Fan Zhang 013 (ISBI, 2025)

TractGraphFormer: Anatomically informed hybrid graph CNN-transformer network for interpretable sex and age prediction from diffusion MRI tractography. - Yuqian Chen; Fan Zhang 013; Meng Wang; Leo R. Zekelman; Suheyla Cetin Karayumak; Tengfei Xue; Chaoyi Zhang; Yang Song 001; Jarrett Rushmore; Nikos Makris; Yogesh Rathi; Weidong Cai 001; et al. (Medical Image Anal., 2025)

DeepNuParc: A novel deep clustering framework for fine-scale parcellation of brain nuclei using diffusion MRI tractography. - Haolin He; Ce Zhu; Le Zhang 001; Yipeng Liu 001; Xiao Xu; Yuqian Chen; Leo R. Zekelman; Jarrett Rushmore; Yogesh Rathi; Nikos Makris; Lauren J. O'Donnell; Fan Zhang 013 (NeuroImage, 2025)

TractCloud-FOV: Deep Learning-based Robust Tractography Parcellation in Diffusion MRI with Incomplete Field of View. - Yuqian Chen; Leo R. Zekelman; Yui Lo; Suheyla Cetin Karayumak; Tengfei Xue; Yogesh Rathi; Nikos Makris; Fan Zhang 013; Tom Weidong Cai; Lauren J. O'Donnell (CoRR, 2025)

DDCSR: A Novel End-to-End Deep Learning Framework for Cortical Surface Reconstruction from Diffusion MRI. - Chengjin Li; Yuqian Chen; Nir A. Sochen; Wei Zhang; Carl-Fredrik Westin; Yogesh Rathi; Lauren J. O'Donnell; Ofer Pasternak; Fan Zhang 013 (CoRR, 2025)

MultiCo3D: Multi-Label Voxel Contrast for One-Shot Incremental Segmentation of 3D Neuroimages. - Hao Xu 042; Tengfei Xue; Dongnan Liu; Yuqian Chen; Fan Zhang 013; Carl-Fredrik Westin; Ron Kikinis; Lauren J. O'Donnell; Weidong Cai 001 (CoRR, 2025)

SNFR: salient neighbor decoding and text feature refining for scene text recognition. - Tongwei Lu; Huageng Fan; Yuqian Chen; Pengyan Shao (Mach. Vis. Appl., 2025)

A Multimodal Deep Learning Approach for White Matter Shape Prediction in Diffusion MRI Tractography. - Yui Lo; Yuqian Chen; Dongnan Liu; Leo R. Zekelman; Jarrett Rushmore; Yogesh Rathi; Nikos Makris; Alexandra J. Golby; Fan Zhang 013; Tom Weidong Cai; Lauren J. O'Donnell (CoRR, 2025)

DeepMultiConnectome: Deep Multi-Task Prediction of Structural Connectomes Directly from Diffusion MRI Tractography. - Marcus J. Vroemen; Yuqian Chen; Yui Lo; Tengfei Xue; Tom Weidong Cai; Fan Zhang 013; Josien P. W. Pluim; Lauren J. O'Donnell (CoRR, 2025)