XRate: a fast prototyping, training and annotation tool for phylo-grammars. - Peter S. Klosterman; Andrew V. Uzilov; Yuri R. Bendaña; Robert K. Bradley; Sharon Chao; Carolin Kosiol; Nick Goldman; Ian H. Holmes (BMC Bioinform., 2006)

Colorstock, SScolor, Ratón: RNA alignment visualization tools. - Yuri R. Bendaña; Ian H. Holmes (Bioinform., 2008)

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. - Sook Jung; Naama Menda; Seth Redmond; Robert M. Buels; Maren Friesen; Yuri R. Bendaña; Lacey-Anne Sanderson; Hilmar Lapp; Taein Lee; Bob MacCallum; Kirstin E. Bett; Scott Cain; et al. (Database J. Biol. Databases Curation, 2011)