SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. - Alexander E. Kel; Mikhail P. Ponomarenko; E. A. Likhachev; Yuri L. Orlov; I. V. Ischenko; Luciano Milanesi; Nikolay A. Kolchanov (Comput. Appl. Biosci., 1993)

Program "Gene Discovery" for Pattern Matching in Promoter Sequences. - Yuri L. Orlov; Evgenii E. Vityaev 001; Oleg V. Vishnevsky; A. S. Belenok; Boris Kovalerchuk; Mikhail A. Pozdnyakov; Nikolay A. Kolchanov (German Conference on Bioinformatics, 2001)

Construction of stochastic context trees for genetical texts. - Yuri L. Orlov; V. P. Filippov; Vladimir N. Potapov; Nikolay A. Kolchanov (Silico Biol., 2002)

Computer system "Gene Discovery" for promoter structure analysis. - Evgenii E. Vityaev 001; Yuri L. Orlov; Oleg V. Vishnevsky; Mikhail A. Pozdnyakov; Nikolay A. Kolchanov (Silico Biol., 2002)

Internet-Available Software Packages for Analysis of DNA Sequence Complexity. - Yuri L. Orlov; Vladimir D. Gusev; Lubov A. Nemytikova; Vladimir N. Potapov; Nadia A. Kolchanov (METMBS, 2003)

Complexity: an internet resource for analysis of DNA sequence complexity. - Yuri L. Orlov; Vladimir N. Potapov (Nucleic Acids Res., 2004)

Statistical Measures of the Structure of Genomic Sequences: Entropy, Complexity, and Position Information. - Yuriy L. Orlov; Rene te Boekhorst; Irina I. Abnizova (J. Bioinform. Comput. Biol., 2006)

APMA Database for Affymetrix Target Sequences Mapping, Quality Assessment and Expression Data Mining. - Yuriy L. Orlov; Jiangtao Zhou; Joanne Chen; Atif Shahab; Vladimir A. Kuznetsov (PRIB, 2007)

Quality Assessment of the Affymetrix U133A&B Probesets by Target Sequence Mapping and Expression Data Analysis. - Yuriy L. Orlov; Jiangtao Zhou; Leonard Lipovich; Atif Shahab; Vladimir A. Kuznetsov (Silico Biol., 2007)

Blurring of High-Resolution Data Shows that the Effect of Intrinsic Nucleosome Occupancy on Transcription Factor Binding is Mostly Regional, Not Local. - Wee Siong Goh; Yuriy L. Orlov; Jingmei Li; Neil D. Clarke (PLoS Comput. Biol., 2010)

Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell. - Yuriy L. Orlov; Han Xu; Dmitry A. Afonnikov; Bing Lim; Jian-Chien Heng; Ping Yuan; Ming Chen 005; Junli Yan; Neil D. Clarke; Nina Orlova; Mikael Huss; Konstantin V. Gunbin; et al. (J. Integr. Bioinform., 2012)

Introductory Note for Bgrs-2012 Special Issue. - Nikolay A. Kolchanov; Yuriy L. Orlov (J. Bioinform. Comput. Biol., 2013)

Introductory note for BGRS SB-2014 special issue. - Yuriy L. Orlov; Ralf Hofestädt; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2015)

Cognitive Architecture of Collective Intelligence Based on Social Evidence. - Anton Kolonin; Evgenii Vityaev 001; Yuriy L. Orlov (BICA, 2016)

Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals. - Vladimir N. Babenko; Anatoly O. Bragin; Anastasia M. Spitsina; Irina V. Chadaeva; Elvira R. Galieva; Galina V. Orlova; Irina V. Medvedeva 001; Yuriy L. Orlov (J. Integr. Bioinform., 2016)

Non-coding RNAs and Their Roles in Stress Response in Plants. - Jingjing Wang; Xianwen Meng; Oxana B. Dobrovolskaya; Yuriy L. Orlov; Ming Chen 005 (Genom. Proteom. Bioinform., 2017)

Editorial - Bioinformatics development at the BGRS SB conference series: 10th anniversary. - Yuriy L. Orlov; Nikolay A. Kolchanov; Ralf Hofestädt; Limsoon Wong (J. Bioinform. Comput. Biol., 2017)

Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events. - Vladimir N. Babenko; Natalya V. Gubanova; Anatoly O. Bragin; Irina V. Chadaeva; Gennady V. Vasiliev; Irina V. Medvedeva 001; Alexey S. Gaytan; Alexey L. Krivoshapkin; Yuriy L. Orlov (J. Integr. Bioinform., 2017)

Biological Big Bytes: Integrative Analysis of Large Biological Datasets. - Ming Chen 005; Andrew P. Harrison; Hugh P. Shanahan; Yuriy L. Orlov (J. Integr. Bioinform., 2017)

CpG islands' clustering uncovers early development genes in the human genome. - Vladimir N. Babenko; Anton G. Bogomolov; Roman O. Babenko; Elvira R. Galieva; Yuriy L. Orlov (Comput. Sci. Inf. Syst., 2018)

Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017). - Yuriy L. Orlov; Tatiana V. Tatarinova; Maksim V. Zakhartsev; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2018)

Bioinformatics research at BGRS-2018. - Tatiana V. Tatarinova; Ming Chen 005; Yuriy L. Orlov (BMC Bioinform., 2019)

Systems biology research at BGRS-2018. - Yuriy L. Orlov; Ralf Hofestädt; Ancha V. Baranova (BMC Syst. Biol., 2019)

Bioinformatics research at BGRS SB-2018. - Yuriy L. Orlov; Ralf Hofestädt; Tatiana V. Tatarinova (J. Bioinform. Comput. Biol., 2019)

The Geographic Information System of the Russian Ministry of Health. - Georgy Lebedev; Alexander Polikarpov; Nikita Golubev; Elena Tyurina; Alexsey Serikov; Dmitriy Selivanov; Yuriy L. Orlov (KES-IDT, 2020)

Bioinformatics research at SBB-2019. - Yuriy L. Orlov; Elvira R. Galieva; Tatiana V. Tatarinova (BMC Bioinform., 2020)

Bioinformatics of genome regulation and structure - 2020 papers collection. - Yuriy L. Orlov; Oxana B. Dobrovolskaya; Ming Chen 005; Ralf Hofestädt (J. Integr. Bioinform., 2020)

Novel ChIP-seq simulating program with superior versatility: isChIP. - Tatiana Subkhankulova; Fedor Naumenko; Oleg E. Tolmachov; Yuriy L. Orlov (Briefings Bioinform., 2021)

Entropy Analysis of Protein Sequences Reveals a Hierarchical Organization. - Anastasia A. Anashkina; Irina Yu. Petrushanko; Rustam H. Ziganshin; Yuriy L. Orlov; Alexei N. Nekrasov (Entropy, 2021)

Glioblastoma gene network reconstruction and ontology analysis by online bioinformatics tools. - Natalya V. Gubanova; Nina Orlova; Arthur I. Dergilev; Nina Y. Oparina; Yuriy L. Orlov (J. Integr. Bioinform., 2021)

Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data. - Arthur I. Dergilev; Nina Orlova; Oxana B. Dobrovolskaya; Yuriy L. Orlov (J. Integr. Bioinform., 2022)

AthRiboNC: an Arabidopsis database for ncRNAs with coding potential revealed from ribosome profiling. - Yi Shen; Liya Liu; Enyan Liu; Sida Li; Yuriy L. Orlov; Vladimir Ivanisenko; Ming Chen 005 (Database J. Biol. Databases Curation, 2024)

Integrating omics databases for enhanced crop breeding. - Haoyu Chao; Shilong Zhang; Yueming Hu; Qingyang Ni; Saige Xin; Liang Zhao; Vladimir A. Ivanisenko; Yuriy L. Orlov; Ming Chen 005 (J. Integr. Bioinform., 2024)

Application of Artificial Intelligence or machine learning in risk sharing agreements for pharmacotherapy risk management. - Grigory A. Oborotov; Konstantin Koshechkin; Yuriy L. Orlov (J. Integr. Bioinform., 2024)

BGRS: bioinformatics of genome regulation and data integration. - Yuriy L. Orlov; Ming Chen 005; Nikolay A. Kolchanov; Ralf Hofestädt (J. Integr. Bioinform., 2024)

Bioinformatic analysis of the regulatory potential of tagging SNPs provides evidence of the involvement of genes encoding the heat-resistant obscure (Hero) proteins in the pathogenesis of cardiovascular diseases. - Vladislav V. Shilenok; Irina V. Shilenok; Vladislav O. Soldatov; Yuriy L. Orlov; Ksenia A. Kobzeva; Alexey V. Deykin; Olga Yu. Bushueva (J. Integr. Bioinform., 2025)