Gene Networks Description and Modeling in the GeneNet System. - Nikolay A. Kolchanov; Elena A. Ananko; Vitali A. Likhoshvai; Olga A. Podkolodnaya; Elena V. Ignatieva; Alexander V. Ratushny; Yuri G. Matushkin (Gene Regulations and Metabolism, 2002)

GeneNet database: description and modeling of gene networks. - Nikolay A. Kolchanov; Eugenia A. Nedosekina; Elena A. Ananko; Vitali A. Likhoshvai; Nikolay L. Podkolodny; Alexander V. Ratushny; Irina L. Stepanenko; Olga A. Podkolodnaya; Elena V. Ignatieva; Yuri G. Matushkin (Silico Biol., 2002)

Simulation of Coevolution in Community by Using the "Evolutionary Constructor" Program. - Sergey A. Lashin; Valentin V. Suslov; Nikolay A. Kolchanov; Yuri G. Matushkin (Silico Biol., 2007)

Comparative Modeling of Coevolution in Communities of Unicellular Organisms: Adaptability and Biodiversity. - Sergey A. Lashin; Valentin V. Suslov; Yuri G. Matushkin (J. Bioinform. Comput. Biol., 2010)

Haploid evolutionary constructor: New features and further challenges. - Sergey A. Lashin; Yuri G. Matushkin (Silico Biol., 2012)

Web application for automatic prediction of gene translation elongation efficiency. - Vladimir Sokolov; Bulat S. Zuraev; Sergei A. Lashin; Yury G. Matushkin (J. Integr. Bioinform., 2015)

AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs. - Alexey V. Kochetov; Jens Allmer; Alexandra I. Klimenko; Bulat S. Zuraev; Yury G. Matushkin; Sergey A. Lashin (Bioinform., 2017)

Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles. - Zakhar S. Mustafin; Sergey A. Lashin; Yury G. Matushkin; Konstantin V. Gunbin; Dmitry A. Afonnikov (BMC Bioinform., 2017)