Self-supervised Semantic Segmentation: Consistency over Transformation. - Sanaz Karimijafarbigloo; Reza Azad; Amirhossein Kazerouni; Yury Velichko; Ulas Bagci; Dorit Merhof (ICCV (Workshops), 2023)

Laplacian-Former: Overcoming the Limitations of Vision Transformers in Local Texture Detection. - Reza Azad; Amirhossein Kazerouni; Babak Azad; Ehsan Khodapanah Aghdam; Yury Velichko; Ulas Bagci; Dorit Merhof (MICCAI (3), 2023)

The ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2023: Intracranial Meningioma. - Dominic LaBella; Maruf Adewole; Michelle Alonso-Basanta; Talissa Altes; Syed Muhammad Anwar; Ujjwal Baid; Timothy Bergquist; Radhika Bhalerao; Sully F. Chen; Verena Chung; Gian Marco Conte; Farouk Dako; et al. (CoRR, 2023)

A multi-institutional pediatric dataset of clinical radiology MRIs by the Children's Brain Tumor Network. - Ariana M. Familiar; Anahita Fathi Kazerooni; Hannah Anderson; Aliaksandr Lubneuski; Karthik Viswanathan; Rocky Breslow; Nastaran Khalili; Sina Bagheri; Debanjan Haldar; Meen Chul Kim; Sherjeel Arif; Rachel Madhogarhia; et al. (CoRR, 2023)

Adaptive Smooth Activation for Improved Disease Diagnosis and Organ Segmentation from Radiology Scans. - Koushik Biswas; Debesh Jha; Nikhil Kumar Tomar; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; Ulas Bagci (CoRR, 2023)

PAM-UNet: Shifting Attention on Region of Interest in Medical Images. - Abhijit Das; Debesh Jha; Vandan Gorade; Koushik Biswas; Hongyi Pan; Zheyuan Zhang; Daniela P. Ladner; Yury Velichko; Amir Borhani; Ulas Bagci (EMBC, 2024)

Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques. - Ziliang Hong; Debesh Jha; Koushik Biswas; Zheyuan Zhang; Yury Velichko; Cemal Yazici; Temel Tirkes; Amir Borhani; Baris Turkbey; Alpay Medetalibeyoglu; Gorkem Durak; Ulas Bagci (EMBC, 2024)

HCA-NET: Hierarchical Context Attention Network for Intervertebral Disc Semantic Labeling. - Afshin Bozorgpour; Bobby Azad; Reza Azad; Yury Velichko; Ulas Bagci; Dorit Merhof (ISBI, 2024)

CT Liver Segmentation Via PVT-Based Encoding and Refined Decoding. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; Ulas Bagci (ISBI, 2024)

Leveraging Unlabeled Data for 3D Medical Image Segmentation Through Self-Supervised Contrastive Learning. - Sanaz Karimijafarbigloo; Reza Azad; Yury Velichko; Ulas Bagci; Dorit Merhof (ISBI, 2024)

Fusenet: Self-Supervised Dual-Path Network For Medical Image Segmentation. - Amirhossein Kazerouni; Sanaz Karimijafarbigloo; Reza Azad; Yury Velichko; Ulas Bagci; Dorit Merhof (ISBI, 2024)

Adaptive Smooth Activation Function for Improved Organ Segmentation and Disease Diagnosis. - Koushik Biswas; Debesh Jha; Nikhil Kumar Tomar; Meghana Karri; Amit Reza; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; Ulas Bagci (MICCAI (9), 2024)

A Novel Momentum-Based Deep Learning Techniques for Medical Image Classification and Segmentation. - Koushik Biswas; Ridam Pal; Shaswat Patel; Debesh Jha; Meghana Karri; Amit Reza; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; et al. (MLMI@MICCAI (1), 2024)

A Probabilistic Hadamard U-Net for MRI Bias Field Correction. - Xin Zhu 005; Hongyi Pan; Batuhan Gundogdu; Debesh Jha; Yury Velichko; Adam B. Murphy; Ashley Ross; Baris Turkbey; Ahmet Enis Çetin; Ulas Bagci (MLMI@MICCAI (1), 2024)

Beyond Self-Attention: Deformable Large Kernel Attention for Medical Image Segmentation. - Reza Azad; Leon Niggemeier; Michael Hüttemann; Amirhossein Kazerouni; Ehsan Khodapanah Aghdam; Yury Velichko; Ulas Bagci; Dorit Merhof (WACV, 2024)

A Probabilistic Hadamard U-Net for MRI Bias Field Correction. - Xin Zhu 005; Hongyi Pan; Yury Velichko; Adam B. Murphy; Ashley Ross; Baris Turkbey; Ahmet Enis Çetin; Ulas Bagci (CoRR, 2024)

MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Matthew Antalek; Zheyuan Zhang; Bin Wang 068; Md Mostafijur Rahman; Hongyi Pan; Alpay Medetalibeyoglu; Yury Velichko; Daniela P. Ladner; et al. (CoRR, 2024)

Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge. - Dominic LaBella; Ujjwal Baid; Omaditya Khanna; Shan McBurney-Lin; Ryan McLean; Pierre Nedelec; Arif Rashid; Nourel Hoda Tahon; Talissa Altes; Radhika Bhalerao; Yaseen Dhemesh; Devon Godfrey; et al. (CoRR, 2024)

The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI. - Maria Correia de Verdier; Rachit Saluja; Louis Gagnon; Dominic LaBella; Ujjwal Baid; Nourel Hoda Tahon; Martha Foltyn-Dumitru; Jikai Zhang; Maram Alafif; Saif Baig; Ken Chang; Gennaro D'Anna; et al. (CoRR, 2024)

Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation. - Dominic LaBella; Katherine Schumacher; Michael Mix; Kevin Leu; Shan McBurney-Lin; Pierre Nedelec; Javier E. Villanueva-Meyer; Jonathan Shapey; Tom Vercauteren; Kazumi Chia; Omar Al-Salihi; Justin Leu; et al. (CoRR, 2024)

A Novel Momentum-Based Deep Learning Techniques for Medical Image Classification and Segmentation. - Koushik Biswas; Ridal Pal; Shaswat Patel; Debesh Jha; Meghana Karri; Amit Reza; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; et al. (CoRR, 2024)

Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI. - Hongyi Pan; Gorkem Durak; Zheyuan Zhang; Yavuz Taktak; Elif Keles; Ertugrul Aktas; Alpay Medetalibeyoglu; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; Rajesh N. Keswani; et al. (CoRR, 2024)

MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Matthew Antalek; Zheyuan Zhang; Bin Wang 068; Md Mostafijur Rahman; Hongyi Pan; Alpay Medetalibeyoglu; Vandan Gorade; Abhijit Das; et al. (ICASSP, 2025)

Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI. - Hongyi Pan; Gorkem Durak; Zheyuan Zhang; Yavuz Taktak; Elif Keles; Halil Ertugrul Aktas; Alpay Medetalibeyoglu; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; Rajesh N. Keswani; et al. (ISBI, 2025)

IPMN Risk Assessment Under Federated Learning Paradigm. - Hongyi Pan; Ziliang Hong; Gorkem Durak; Elif Keles; Halil Ertugrul Aktas; Yavuz Taktak; Alpay Medetalibeyoglu; Zheyuan Zhang; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; et al. (ISBI, 2025)

Large-scale multi-center CT and MRI segmentation of pancreas with deep learning. - Zheyuan Zhang; Elif Keles; Gorkem Durak; Yavuz Taktak; Onkar Susladkar; Vandan Gorade; Debesh Jha; Asli C. Ormeci; Alpay Medetalibeyoglu; Lanhong Yao; Bin Wang 068; Ilkin Sevgi Isler; et al. (Medical Image Anal., 2025)

Cyst-X: AI-Powered Pancreatic Cancer Risk Prediction from Multicenter MRI in Centralized and Federated Learning. - Hongyi Pan; Gorkem Durak; Elif Keles; Deniz Seyithanoglu; Zheyuan Zhang; Alpay Medetalibeyoglu; Halil Ertugrul Aktas; Andrea Mia Bejar; Ziliang Hong; Yavuz Taktak; Gulbiz Dagoglu Kartal; Sukru Mehmet Erturk; et al. (CoRR, 2025)