Empowering AI drug discovery with explicit and implicit knowledge. - Yizhen Luo; Kui Huang; Massimo Hong; Kai Yang; Jiahuan Zhang; Yushuai Wu; Zaiqing Nie (CoRR, 2023)

BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine. - Yizhen Luo; Jiahuan Zhang; Siqi Fan 002; Kai Yang; Yushuai Wu; Mu Qiao; Zaiqing Nie (CoRR, 2023)

LangCell: Language-Cell Pre-training for Cell Identity Understanding. - Suyuan Zhao; Jiahuan Zhang; Yushuai Wu; Yizhen Luo; Zaiqing Nie (ICML, 2024)

DeepCRE: Transforming Drug R&D via AI-Driven Cross-drug Response Evaluation. - Yushuai Wu; Ting Zhang; Hao Zhou 012; Hainan Wu; Hanwen Sunchu; Lei Hu; Xiaofang Chen; Suyuan Zhao; Gaochao Liu; Chao Sun; Jiahuan Zhang; Yizhen Luo; et al. (CoRR, 2024)

Structure-Based Molecule Optimization via Gradient-Guided Bayesian Update. - Keyue Qiu; Yuxuan Song; Jie Yu; Hongbo Ma; Ziyao Cao; Zhilong Zhang; Yushuai Wu; Mingyue Zheng; Hao Zhou 012; Wei-Ying Ma (CoRR, 2024)

ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data. - Yifeng Jiao; Yuchen Liu; Yu Zhang; Xin Guo; Yushuai Wu; Chen Jiang; Jiyang Li; Hongwei Zhang; Limei Han; Xin Gao; Yuan Qi; Yuan Cheng (CoRR, 2025)

PAST: A multimodal single-cell foundation model for histopathology and spatial transcriptomics in cancer. - Changchun Yang; Haoyang Li; Yushuai Wu; Yilan Zhang; Yifeng Jiao; Yu Zhang; Rihan Huang; Yuan Cheng; Yuan Qi; Xin Guo; Xin Gao (CoRR, 2025)