High performance 3-D FFT using multiple CUDA GPUs. - Akira Nukada; Yutaka Maruyama; Satoshi Matsuoka (GPGPU@ASPLOS, 2012)

Massively parallel implementation of 3D-RISM calculation with volumetric 3D-FFT. - Yutaka Maruyama; Norio Yoshida; Hiroto Tadano; Daisuke Takahashi; Mitsuhisa Sato; Fumio Hirata (J. Comput. Chem., 2014)

A solvation-free-energy functional: A reference-modified density functional formulation. - Tomonari Sumi; Ayori Mitsutake; Yutaka Maruyama (J. Comput. Chem., 2015)

Erratum: "A solvation-free-energy functional: A reference-modified density functional formulation" [J. Comput. Chem 36, 1359-1369]. - Tomonari Sumi; Ayori Mitsutake; Yutaka Maruyama (J. Comput. Chem., 2015)

Automatic generation of efficient codes from mathematical descriptions of stencil computation. - Takayuki Muranushi; Seiya Nishizawa; Hirofumi Tomita; Keigo Nitadori; Masaki Iwasawa; Yutaka Maruyama; Hisashi Yashiro; Yoshifumi Nakamura; Hideyuki Hotta; Junichiro Makino; Natsuki Hosono; Hikaru Inoue (FHPC@ICFP, 2016)

Simulations of below-ground dynamics of fungi: 1.184 pflops attained by automated generation and autotuning of temporal blocking codes. - Takayuki Muranushi; Hideyuki Hotta; Junichiro Makino; Seiya Nishizawa; Hirofumi Tomita; Keigo Nitadori; Masaki Iwasawa; Natsuki Hosono; Yutaka Maruyama; Hikaru Inoue; Hisashi Yashiro; Yoshifumi Nakamura (SC, 2016)

Application of reference-modified density functional theory: Temperature and pressure dependences of solvation free energy. - Tomonari Sumi; Yutaka Maruyama; Ayori Mitsutake; Kenji Mochizuki; Kenichiro Koga (J. Comput. Chem., 2018)

Preliminary Performance Evaluation of the Fujitsu A64FX Using HPC Applications. - Tetsuya Odajima; Yuetsu Kodama; Miwako Tsuji; Motohiko Matsuda; Yutaka Maruyama; Mitsuhisa Sato (CLUSTER, 2020)

Computational Analysis of the SARS-CoV-2 RBD-ACE2-Binding Process Based on MD and the 3D-RISM Theory. - Norio Yoshida; Yutaka Maruyama; Ayori Mitsutake; Akiyoshi Kuroda; Ryo Fujiki; Kodai Kanemaru; Daisuke Okamoto; Alexander E. Kobryn; Sergey Gusarov; Haruyuki Nakano (J. Chem. Inf. Model., 2022)

Analysis of Protein Folding Simulation with Moving Root Mean Square Deviation. - Yutaka Maruyama; Ryo Igarashi 002; Yoshitaka Ushiku; Ayori Mitsutake (J. Chem. Inf. Model., 2023)

RISMiCal: A software package to perform fast RISM/3D-RISM calculations. - Yutaka Maruyama; Norio Yoshida (J. Comput. Chem., 2024)