Detecting transcriptomic structural variants in heterogeneous contexts via the Multiple Compatible Arrangements Problem. - Yutong Qiu; Cong Ma 008; Han Xie; Carl Kingsford (Algorithms Mol. Biol., 2020)

Constructing small genome graphs via string compression. - Yutong Qiu; Carl Kingsford (Bioinform., 2021)

A flexible ChIP-sequencing simulation toolkit. - An Zheng; Michael Lamkin; Yutong Qiu; Kevin Ren; Alon Goren; Melissa Gymrek (BMC Bioinform., 2021)

The effect of genome graph expressiveness on the discrepancy between genome graph distance and string set distance. - Yutong Qiu; Carl Kingsford (Bioinform., 2022)

Graph-Based Genome Inference from Hi-C Data. - Yihang Shen; Lingge Yu; Yutong Qiu; Tianyu Zhang; Carl Kingsford (RECOMB, 2024)

Revisiting the complexity of and algorithms for the graph traversal edit distance and its variants. - Yutong Qiu; Yihang Shen; Carl Kingsford (Algorithms Mol. Biol., 2024)