repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. - Yuval Elhanati; Quentin Marcou; Thierry Mora; Aleksandra M. Walczak (Bioinform., 2016)

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. - Mikhail V. Pogorelyy; Yuval Elhanati; Quentin Marcou; Anastasiia L. Sycheva; Ekaterina Komech; Vadim I. Nazarov; Olga V. Britanova; Dmitry M. Chudakov; Ilgar Z. Mamedov; Yuri B. Lebedev; Thierry Mora; Aleksandra M. Walczak (PLoS Comput. Biol., 2017)

OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. - Zachary Sethna; Yuval Elhanati; Curtis G. Callan Jr.; Aleksandra M. Walczak; Thierry Mora (Bioinform., 2019)

Population variability in the generation and selection of T-cell repertoires. - Zachary Sethna; Giulio Isacchini; Thomas Dupic; Thierry Mora; Aleksandra M. Walczak; Yuval Elhanati (PLoS Comput. Biol., 2020)