Visibility preserving terrain simplification– an experimental study. - Boaz Ben-Moshe; Matthew J. Katz; Joseph S. B. Mitchell; Yuval Nir (Comput. Geom., 2004)

Orthogonal segment stabbing. - Matthew J. Katz; Joseph S. B. Mitchell; Yuval Nir (Comput. Geom., 2005)

Widespread functional connectivity and fMRI fluctuations in human visual cortex in the absence of visual stimulation. - Yuval Nir; Uri Hasson; Ifat Levy; Yehezkel Yeshurun; Rafael Malach (NeuroImage, 2006)

Regionally-specific adaptation dynamics in human object areas. - Sharon Gilaie-Dotan; Yuval Nir; Rafael Malach (NeuroImage, 2008)

Optical Designs for Non-deterministic Turing Machines. - Shlomi Dolev; Yuval Nir (OSC, 2009)

Resting state functional connectivity reflects abnormal task-activated patterns in a developmental object agnosic. - Sharon Gilaie-Dotan; Avital Hahamy-Dubossarsky; Yuval Nir; Aviva Berkovich-Ohana; Shlomo Bentin; Rafael Malach (NeuroImage, 2013)

SleepEEGpy: a Python-based software integration package to organize preprocessing, analysis, and visualization of sleep EEG data. - Rotem Falach; G. Belonosov; Flavio Jean Schmidig; Maya Aderka; Vladislav Zhelezniakov; R. Shani-Hershkovich; E. Bar; Yuval Nir (Comput. Biol. Medicine, 2025)