Yu Zong Chen

Orcid: 0000-0001-6387-327X

According to our database1, Yu Zong Chen authored at least 76 papers between 2002 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Deep learning of 2D-Restructured gene expression representations for improved low-sample therapeutic response prediction.
Comput. Biol. Medicine, September, 2023

Infrared Spectral Analysis for Prediction of Functional Groups Based on Feature-Aggregated Deep Learning.
J. Chem. Inf. Model., August, 2023

BP-SCIM: A Reconfigurable 8T SRAM Macro for Bit-Parallel Searching and Computing In-Memory.
IEEE Trans. Circuits Syst. I Regul. Pap., May, 2023

Enhanced metagenomic deep learning for disease prediction and consistent signature recognition by restructured microbiome 2D representations.
Patterns, January, 2023

Toward ordered -omics data science: Researchers on the magic of turning metagenomic chaos into image-like patterns.
Patterns, January, 2023

NPASS database update 2023: quantitative natural product activity and species source database for biomedical research.
Nucleic Acids Res., January, 2023

DrugMAP: molecular atlas and pharma-information of all drugs.
Nucleic Acids Res., January, 2023

M4BRAM: Mixed-Precision Matrix-Matrix Multiplication in FPGA Block RAMs.
Proceedings of the International Conference on Field Programmable Technology, 2023

BRAMAC: Compute-in-BRAM Architectures for Multiply-Accumulate on FPGAs.
Proceedings of the 31st IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2023

2022
Therapeutic target database update 2022: facilitating drug discovery with enriched comparative data of targeted agents.
Nucleic Acids Res., 2022

An Overview of Processing-in-Memory Circuits for Artificial Intelligence and Machine Learning.
IEEE J. Emerg. Sel. Topics Circuits Syst., 2022

<i>In silico</i> approaches uncovering the systematic function of <i>N</i>-phosphorylated proteins in human cells.
Comput. Biol. Medicine, 2022

ConSIG: consistent discovery of molecular signature from OMIC data.
Briefings Bioinform., 2022

A Reconfigurable 8T SRAM Macro for Bit-Parallel Searching and Computing In-Memory.
Proceedings of the IEEE International Symposium on Circuits and Systems, 2022

A 181µW Real-Time 3-D Hand Gesture Recognition System based on Bi-directional Convolution and Computing-Efficient Feature Clustering.
Proceedings of the IEEE Custom Integrated Circuits Conference, 2022

2021
A Reconfigurable 4T2R ReRAM Computing In-Memory Macro for Efficient Edge Applications.
IEEE Open J. Circuits Syst., 2021

Out-of-the-box deep learning prediction of pharmaceutical properties by broadly learned knowledge-based molecular representations.
Nat. Mach. Intell., 2021

MASI: microbiota - active substance interactions database.
Nucleic Acids Res., 2021

Histopathology classification and localization of colorectal cancer using global labels by weakly supervised deep learning.
Comput. Medical Imaging Graph., 2021

Erratum to: LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor.
Briefings Bioinform., 2021

AND8T SRAM Macro with Improved Linearity for Multi-Bit In-Memory Computing.
Proceedings of the IEEE International Symposium on Circuits and Systems, 2021

A Configurable Randomness Enhanced RRAM PUF with Biased Current Sensing Scheme.
Proceedings of the IEEE International Symposium on Circuits and Systems, 2021

A Multi-Functional 4T2R ReRAM Macro Enabling 2-Dimensional Access and Computing In-Memory.
Proceedings of the IEEE International Symposium on Circuits and Systems, 2021

2020
Reconfigurable 2T2R ReRAM Architecture for Versatile Data Storage and Computing In-Memory.
IEEE Trans. Very Large Scale Integr. Syst., 2020

Therapeutic target database 2020: enriched resource for facilitating research and early development of targeted therapeutics.
Nucleic Acids Res., 2020

LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor.
Briefings Bioinform., 2020

Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data.
Briefings Bioinform., 2020

ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies.
Briefings Bioinform., 2020

Clinical trials, progression-speed differentiating features and swiftness rule of the innovative targets of first-in-class drugs.
Briefings Bioinform., 2020

Reconfigurable 2T2R ReRAM with Split Word-Lines for TCAM Operation and In-Memory Computing.
Proceedings of the IEEE International Symposium on Circuits and Systems, 2020

2019
CMAUP: a database of collective molecular activities of useful plants.
Nucleic Acids Res., 2019

Clustering Bioactive Molecules in 3D Chemical Space with Unsupervised Deep Learning.
CoRR, 2019

2018
NPASS: natural product activity and species source database for natural product research, discovery and tool development.
Nucleic Acids Res., 2018

Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics.
Nucleic Acids Res., 2018

2017
NOREVA: normalization and evaluation of MS-based metabolomics data.
Nucleic Acids Res., 2017

HEROD: a human ethnic and regional specific omics database.
Bioinform., 2017

A protein network descriptor server and its use in studying protein, disease, metabolic and drug targeted networks.
Briefings Bioinform., 2017

2016
Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information.
Nucleic Acids Res., 2016

2015
CFam: a chemical families database based on iterative selection of functional seeds and seed-directed compound clustering.
Nucleic Acids Res., 2015

2014
Therapeutic target database update 2014: a resource for targeted therapeutics.
Nucleic Acids Res., 2014

A prediction model of drug-induced ototoxicity developed by an optimal support vector machine (SVM) method.
Comput. Biol. Medicine, 2014

2012
Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery.
Nucleic Acids Res., 2012

Prediction of human major histocompatibility complex class II binding peptides by continuous kernel discrimination method.
Artif. Intell. Medicine, 2012

2011
HIT: linking herbal active ingredients to targets.
Nucleic Acids Res., 2011

Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence.
Nucleic Acids Res., 2011

Effect of training data size and noise level on support vector machines virtual screening of genotoxic compounds from large compound libraries.
J. Comput. Aided Mol. Des., 2011

An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability.
BMC Syst. Biol., 2011

2010
Update of TTD: Therapeutic Target Database.
Nucleic Acids Res., 2010

<i>In silico</i> prediction and screening of gamma-secretase inhibitors by molecular descriptors and machine learning methods.
J. Comput. Chem., 2010

Identification of small molecule aggregators from large compound libraries by support vector machines.
J. Comput. Chem., 2010

Computational model of VEGF, thrombin and histamine signalling network.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
Update of KDBI: Kinetic Data of Bio-molecular Interaction database.
Nucleic Acids Res., 2009

Virtual Screening of Abl Inhibitors from Large Compound Libraries by Support Vector Machines.
J. Chem. Inf. Model., 2009

Prediction of antibacterial compounds by machine learning approaches.
J. Comput. Chem., 2009

Simulation of DNA electrophoresis in systems of large number of solvent particles by coarse-grained hybrid molecular dynamics approach.
J. Comput. Chem., 2009

Simulation of crosstalk between small GTPase RhoA and EGFR-ERK signaling pathway via MEKK1.
Bioinform., 2009

2008
Evaluation of Virtual Screening Performance of Support Vector Machines Trained by Sparsely Distributed Active Compounds.
J. Chem. Inf. Model., 2008

2007
PharmGED: Pharmacogenetic Effect Database.
Nucleic Acids Res., 2007

Efficacy of different protein descriptors in predicting protein functional families.
BMC Bioinform., 2007

DITOP: drug-induced toxicity related protein database.
Bioinform., 2007

2006
PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence.
Nucleic Acids Res., 2006

PEARLS: Program for Energetic Analysis of Receptor-Ligand System.
J. Chem. Inf. Model., 2006

Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach.
BMC Bioinform., 2006

Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

2005
Prediction of Cytochrome P450 3A4, 2D6, and 2C9 Inhibitors and Substrates by Using Support Vector Machines.
J. Chem. Inf. Model., 2005

Effect of Selection of Molecular Descriptors on the Prediction of Blood-Brain Barrier Penetrating and Nonpenetrating Agents by Statistical Learning Methods.
J. Chem. Inf. Model., 2005

Assessment of approximate string matching in a biomedical text retrieval problem.
Comput. Biol. Medicine, 2005

2004
MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids.
Nucleic Acids Res., 2004

Prediction of P-Glycoprotein Substrates by a Support Vector Machine Approach.
J. Chem. Inf. Model., 2004

Effect of Molecular Descriptor Feature Selection in Support Vector Machine Classification of Pharmacokinetic and Toxicological Properties of Chemical Agents.
J. Chem. Inf. Model., 2004

TRMP: a database of therapeutically relevant multiple pathways.
Bioinform., 2004

2003
KDBI: Kinetic Data of Bio-molecular Interactions database.
Nucleic Acids Res., 2003

SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence.
Nucleic Acids Res., 2003

2002
TTD: Therapeutic Target Database.
Nucleic Acids Res., 2002

CLiBE: A Database of Computed Ligand Binding Energy for Ligand-receptor Complexes.
Comput. Chem., 2002

ADME-AP: a database of ADME associated proteins.
Bioinform., 2002


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