Comparing SNOMED and ICPC retrieval accuracies using relational database models. - Yves A. Lussier; Michel Bourque (AMIA, 1997)

Measuring the Accuracy of a Nomenclature Encoder Supporting Postcoordination. - Yves A. Lussier (AMIA, 1998)

Modeling patient response to acute myocardial infarction: implications for a tailored technology-based program to reduce patient delay. - Rita Kukafka; Yves A. Lussier; Vimla L. Patel; James J. Cimino (AMIA, 1999)

Overcoming the Barriers of Web-Based Interventions for Elder Patients: Enabling Strategies for the MI HEART Clinical Trial. - Yves A. Lussier; Rita Kukafka; James J. Cimino (AMIA, 1999)

A Web-based System For Prediction Of Coronary Heart Disease Risk Using The Framingham Algorithm. - Jen-Hsiang Chuang; Rita Kukafka; Yves A. Lussier; Robert A. Jenders; James J. Cimino (AMIA, 2000)

Developing and Evaluating Theory-based Educational Content for WEB Applications. - Rita Kukafka; Yves A. Lussier; James J. Cimino (AMIA, 2000)

Formal combinations of guidelines: a requirement for self-administered personalized health education. - Yves A. Lussier; Rita Kukafka; Vimla L. Patel; James J. Cimino (AMIA, 2000)

Automating ICD-9-CM Encoding Using Medical Language Processing: A Feasibility Study. - Yves A. Lussier; Lyudmila Shagina; Carol Friedman (AMIA, 2000)

Improving the Development of Composite Educational Guidelines Using Decomposition of Concept Lattices. - Yves A. Lussier; Dongwen Wang; Rita Kukafka; James J. Cimino (AMIA, 2000)

The MI-HEART Project: Information Technology (IT) for One-to-One Tailored Patient Communication. - Rita Kukafka; Yves A. Lussier; Vimla L. Patel; James J. Cimino (AMIA, 2001)

Harnessing Web Information Technologies for Secure, Adaptive and Individualized Health Communications. - Jianhua Li; Yves A. Lussier; Rita Kukafka; James J. Cimino (AMIA, 2001)

A study of abbreviations in the UMLS. - Hongfang Liu; Yves A. Lussier; Carol Friedman (AMIA, 2001)

MI-HEART: a Comprehensive Management System to Deliver, Monitor and Measure Efficacy of Individualized Web-based Education. - Yves A. Lussier; Rita Kukafka; Jianhua Li; Vimla L. Patel; James J. Cimino (AMIA, 2001)

Lessons Learned in the Early Phase of the MI-HEART Clinical Trial. - Yves A. Lussier; Rita Kukafka; Tamiru L. Mammo; Allison Linfante; Vimla L. Patel; James J. Cimino (AMIA, 2001)

Automating SNOMED coding using medical language understanding: a feasibility study. - Yves A. Lussier; Lyudmila Shagina; Carol Friedman (AMIA, 2001)

Developing Tailored Theory-based Educational Content for WEB Applications: Illustrations from the MI-HEART Project. - Rita Kukafka; Yves A. Lussier; Vimla L. Patel; James J. Cimino (MedInfo, 2001)

Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method. - Hongfang Liu; Yves A. Lussier; Carol Friedman (J. Biomed. Informatics, 2001)

A knowledge framework for computational molecular-disease relationships in cancer. - Michael N. Cantor; Yves A. Lussier (AMIA, 2002)

Web-based tailoring and its effect on self-efficacy: results from the MI-HEART randomized controlled trial. - Rita Kukafka; Yves A. Lussier; P. Eng; Vimla L. Patel; James J. Cimino (AMIA, 2002)

An integrative model for in-silico clinical-genomics discovery science. - Yves A. Lussier; Indra Neil Sarkar; Michael Cantor (AMIA, 2002)

Exploring SNOMED Using Phylogenetic Analysis Tools. - Indra Neil Sarkar; Michael N. Cantor; Robert DeSalle; Yves A. Lussier (AMIA, 2002)

Extended attributes of event monitor systems for criteria-based notification modalities. - Ying Tao; Dongwen Wang; Edward H. Shortliffe; Yves A. Lussier (AMIA, 2002)

Putting Data Integration into Practice: Using Biomedical Terminologies to Add Structure to Existing Data Sources. - Michael N. Cantor; Yves A. Lussier (AMIA, 2003)

Adapting Current Arden Syntax Knowledge for an Object Oriented Event Monitor. - Jeeyae Choi; Yves A. Lussier; Eneida A. Mendonça (AMIA, 2003)

Guideline Interaction: a study of interactions among drug-disease contraindication rules. - Te-Hui Kuo; Eneida A. Mendonça; Jianrong Li; Yves A. Lussier (AMIA, 2003)

A "Systematics" Tool for Medical Terminologies. - Ying Tao; Eneida A. Mendonça; Yves A. Lussier (AMIA, 2003)

An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS®$. - Michael N. Cantor; Indra Neil Sarkar; R. Gelman; Frank W. Hartel; Olivier Bodenreider; Yves A. Lussier (MIE, 2003)

Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS. - Indra Neil Sarkar; Michael N. Cantor; R. Gelman; Frank W. Hartel; Yves A. Lussier (Pacific Symposium on Biocomputing, 2003)

Mining OMIM$^{ rade}$ for Insight into Complex Diseases. - Michael N. Cantor; Yves A. Lussier (MedInfo, 2004)

A Tool for Abstracting Relevant Classes of Concepts: the Common Ancestry Summarizer. - Ying Tao; Eneida A. Mendonça; Yves A. Lussier (MedInfo, 2004)

Automated Terminology Networks for the Integration of Heterogeneous Databases. - Xiaoyan Wang; Hui Nar Quek; Michael Cantor; Pauline Kra; Aylit Schultz; Yves A. Lussier (MedInfo, 2004)

Terminological Mapping for High Throughput Comparative Biology of Phenotypes. - Yves A. Lussier; Jianrong Li (Pacific Symposium on Biocomputing, 2004)

Research Paper: Automated Encoding of Clinical Documents Based on Natural Language Processing. - Carol Friedman; Lyudmila Shagina; Yves A. Lussier; George Hripcsak (J. Am. Medical Informatics Assoc., 2004)

Partitioning Knowledge Bases between Advanced Notification and Clinical Decision Support Systems. - Tara Borlawsky; Jianrong Li; Srikant Jalan; Edie Stern; Rose Williams; Yves A. Lussier (AMIA, 2005)

Natural Language Processing in the Molecular Imaging Domain. - P. Karina Tulipano; Ying Tao; Pat Zanzonico; Katherine Kolbert; Yves A. Lussier; Carol Friedman (AMIA, 2005)

Cascading Policies Provide Fault Tolerance for Pervasive Clinical Communications. - Rose Williams; Srikant Jalan; Edie Stern; Yves A. Lussier (PerCom Workshops, 2005)

GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. - Michael N. Cantor; Indra Neil Sarkar; Olivier Bodenreider; Yves A. Lussier (Pacific Symposium on Biocomputing, 2005)

Visualizing information across multidimensional post-genomic structured and textual databases. - Ying Tao; Carol Friedman; Yves A. Lussier (Bioinform., 2005)

Generating Executable Knowledge for Evidence-Based Medicine Using Natural Language and Semantic Processing. - Tara Borlawsky; Carol Friedman; Yves A. Lussier (AMIA, 2006)

Issues in Representing Biological and Clinical Phenotypes Using the Formal Models. - Ying Tao; Chintan Patel; Carol Friedman; Yves A. Lussier (KR-MED, 2006)

PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing. - Yves A. Lussier; Tara Borlawsky; Daniel Rappaport; Yang Liu 023; Carol Friedman (Pacific Symposium on Biocomputing, 2006)

Session Introduction. - Robert Stevens 001; Olivier Bodenreider; Yves A. Lussier (Pacific Symposium on Biocomputing, 2006)

Bio-Ontology and text: bridging the modeling gap. - Carol Friedman; Tara Borlawsky; Lyudmila Shagina; H. Rosie Xing; Yves A. Lussier (Bioinform., 2006)

Terminology model discovery using natural language processing and visualization techniques. - Li Zhou 007; Ying Tao; James J. Cimino; Elizabeth S. Chen; Hongfang Liu; Yves A. Lussier; George Hripcsak; Carol Friedman (J. Biomed. Informatics, 2006)

An Integrative Genomic Approach to Uncover Molecular Mechanisms of Prokaryotic Traits. - Yang Liu 023; Jianrong Li; Lee T. Sam; Chern-Sing Goh; Mark Gerstein; Yves A. Lussier (PLoS Comput. Biol., 2006)

Detection of Practice Pattern Trends through Natural Language Processing of Clinical Narratives and Biomedical Literature. - Elizabeth S. Chen; Peter D. Stetson; Yves A. Lussier; Marianthi Markatou; George Hripcsak; Carol Friedman (AMIA, 2007)

Information-Theoretic Classification of SNOMED Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews. - Lee T. Sam; Tara Borlawsky; Ying Tao; Jianrong Li; Carol Friedman; Barry Smith 001; Yves A. Lussier (AMIA, 2007)

Information theory applied to the sparse gene ontology annotation network to predict novel gene function. - Ying Tao; Lee T. Sam; Jianrong Li; Carol Friedman; Yves A. Lussier (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Discovery of Protein Interaction Networks Shared by Diseases. - Lee T. Sam; Yang Liu 023; Jianrong Li; Carol Friedman; Yves A. Lussier (Pacific Symposium on Biocomputing, 2007)

Evaluation of high-throughput functional categorization of human disease genes. - James L. Chen; Yang Liu 023; Lee T. Sam; Jianrong Li; Yves A. Lussier (BMC Bioinform., 2007)

Partitioning knowledge bases between advanced notification and clinical decision support systems. - Yves A. Lussier; Rose Williams; Jianrong Li; Srikant Jalan; Tara Borlawsky; Edie Stern; Inderpal Kohli (Decis. Support Syst., 2007)

Research Paper: Topological Analysis of Large-scale Biomedical Terminology Structures. - Michael E. Bales; Yves A. Lussier; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 2007)

Natural language processing and visualization in the molecular imaging domain. - P. Karina Tulipano; Ying Tao; William S. Millar; Pat Zanzonico; Katherine Kolbert; Hua Xu 001; Hong Yu 001; Lifeng Chen; Yves A. Lussier; Carol Friedman (J. Biomed. Informatics, 2007)

Session Introduction. - Yves A. Lussier; Younghee Lee; Predrag Radivojac; Yanay Ofran; Marco Punta; Atul J. Butte; Maricel G. Kann (Pacific Symposium on Biocomputing, 2008)

Session Introduction. - Yves A. Lussier; Younghee Lee; Predrag Radivojac; Yanay Ofran; Atul J. Butte; Maricel G. Kann (Pacific Symposium on Biocomputing, 2009)

Selected proceedings of the First Summit on Translational Bioinformatics 2008. - Atul J. Butte; Indra Neil Sarkar; Marco Ramoni; Yves A. Lussier; Olga G. Troyanskaya (BMC Bioinform., 2009)

Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays. - Yang Liu 023; Lee T. Sam; Jianrong Li; Yves A. Lussier (BMC Bioinform., 2009)

Selected proceedings of the 2009 Summit on Translational Bioinformatics. - Yves A. Lussier; Indra Neil Sarkar (BMC Bioinform., 2009)

PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. - Lee T. Sam; Eneida A. Mendonça; Jianrong Li; Judith A. Blake; Carol Friedman; Yves A. Lussier (BMC Bioinform., 2009)

Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. - Xinan Yang; Yong Huang; James L. Chen; Jianming Xie; Xiao Sun 006; Yves A. Lussier (BMC Bioinform., 2009)

Clinical Ontologies. - Yves A. Lussier; James L. Chen (Encyclopedia of Database Systems, 2009)

Interoperation of NLP-based Systems with Clinical Databases. - Yves A. Lussier; Matthew G. Crowson (Encyclopedia of Database Systems, 2009)

Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models. - Xinan Yang; Younghee Lee; Yong Huang; James L. Chen; H. Rosie Xing; Yves A. Lussier (BMC Bioinform., 2010)

Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. - James L. Chen; Lee T. Sam; Yong Huang; Younghee Lee; Jianrong Li; Yang Liu 023; H. Rosie Xing; Yves A. Lussier (J. Biomed. Informatics, 2010)

Current methodologies for translational bioinformatics. - Yves A. Lussier; Atul J. Butte; Lawrence Hunter (J. Biomed. Informatics, 2010)

Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data. - Xinan Yang; Yong Huang; Matthew G. Crowson; Jianrong Li; Michael L. Maitland; Yves A. Lussier (J. Biomed. Informatics, 2010)

Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis. - Younghee Lee; Xinan Yang; Yong Huang; Hanli Fan; Qingbei Zhang; Youngfei Wu; Jianrong Li; Rifat Hasina; Chao Cheng; Mark W. Lingen; Mark B. Gerstein; Ralph R. Weichselbaum; et al. (PLoS Comput. Biol., 2010)

Scalability and cost of a cloud-based approach to medical NLP. - Kyle Chard; Michael Russell; Yves A. Lussier; Eneida A. Mendonça; Jonathan C. Silverstein (CBMS, 2011)

GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. - Xinan Yang; Jianrong Li; Younghee Lee; Yves A. Lussier (Bioinform., 2011)

Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. - James L. Chen; Jianrong Li; Walter M. Stadler; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2011)

Translational bioinformatics: linking knowledge across biological and clinical realms. - Indra Neil Sarkar; Atul J. Butte; Yves A. Lussier; Peter Tarczy-Hornoch; Lucila Ohno-Machado (J. Am. Medical Informatics Assoc., 2011)

Towards Mechanism Classifiers: Expression-anchored Gene Ontology Signature Predicts Clinical Outcome in Lung Adenocarcinoma Patients. - Xinan Yang; Haiquan Li; Kelly Regan; Jianrong Li; Yong Huang; H. Rosie Xing; Yves A. Lussier (AMIA, 2012)

Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. - Haiquan Li; Younghee Lee; James L. Chen; Ellen Rebman; Jianrong Li; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2012)

Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. - Yves A. Lussier; Walter M. Stadler; James L. Chen (J. Am. Medical Informatics Assoc., 2012)

Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. - Kelly Regan; Kanix Wang; Emily Doughty; Haiquan Li; Jianrong Li; Younghee Lee; Maricel G. Kann; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2012)

Breakthroughs in genomics data integration for predicting clinical outcome. - Yves A. Lussier; Haiquan Li (J. Biomed. Informatics, 2012)

Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer. - Xinan Yang; Kelly Regan; Yong Huang; Qingbei Zhang; Jianrong Li; Tanguy Y. Seiwert; Ezra E. W. Cohen; H. Rosie Xing; Yves A. Lussier (PLoS Comput. Biol., 2012)

HospSum: Integrating physician discharge notes with coded nursing care data to generate patient-centric summaries. - Barbara Di Eugenio; Camillo Lugaresi; Gail M. Keenan; Yves A. Lussier; Jianrong Li; Mike D. Burton; Carol Friedman; Andrew D. Boyd (AMIA, 2013)

Interpreting Personal Transcriptomes: Personalized Mechanism-Scale Profiling of RNA-seq Data. - Alan Perez-Rathke; Haiquan Li; Yves A. Lussier (Pacific Symposium on Biocomputing, 2013)

Research and applications: The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools. - Andrew D. Boyd; Jianrong John Li; Mike D. Burton; Michael Jonen; Vincent Gardeux; Ikbel Achour; Roger Q. Luo; Ilir Zenku; Neil Bahroos; Stephen B. Brown; Terry L. Vanden Hoek; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2013)

Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. - Younghee Lee; Haiquan Li; Jianrong Li; Ellen Rebman; Ikbel Achour; Kelly Regan; Eric R. Gamazon; James L. Chen; Xinan Holly Yang; Nancy J. Cox; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2013)

People, organizational, and leadership factors impacting informatics support for clinical and translational research. - Philip R. O. Payne; Taylor R. Pressler; Indra Neil Sarkar; Yves A. Lussier (BMC Medical Informatics Decis. Mak., 2013)

COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling. - Young Ji Lee; Andrew D. Boyd; Jianrong Li; Vincent Gardeux; Colleen Kenost; Donald Saner; Haiquan Li; Ivo L. Abraham; Jerry A. Krishnan; Yves A. Lussier (AMIA, 2014)

What's In A Name: Precision Medicine and a New Nosology. - Mark S. Tuttle; Stuart J. Nelson; Yves A. Lussier; Amber M. Johnson (AMIA, 2014)

PatientNarr: Towards generating patient-centric summaries of hospital stays. - Barbara Di Eugenio; Andrew D. Boyd; Camillo Lugaresi; Abhinaya Balasubramanian; Gail M. Keenan; Mike D. Burton; Tamara Goncalves Rezende Macieira; Jianrong Li; Yves A. Lussier (INLG, 2014)

ARTS: automated randomization of multiple traits for study design. - Mark Maienschein-Cline; Zhengdeng Lei; Vincent Gardeux; Taimur Abbasi; Roberto F. Machado; Victor Gordeuk; Ankit A. Desai; Santosh Saraf; Neil Bahroos; Yves A. Lussier (Bioinform., 2014)

'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine. - Vincent Gardeux; Ikbel Achour; Jianrong Li; Mark Maienschein-Cline; Haiquan Li; Lorenzo L. Pesce; Gurunadh Parinandi; Neil Bahroos; Robert Winn; Ian T. Foster; Joe G. N. Garcia; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2014)

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival. - A. Grant Schissler; Vincent Gardeux; Qike Li; Ikbel Achour; Haiquan Li; Walter W. Piegorsch; Yves A. Lussier (Bioinform., 2015)

Metrics and tools for consistent cohort discovery and financial analyses post-transition to ICD-10-CM. - Andrew D. Boyd; Jianrong John Li; Colleen Kenost; Binoy Joese; Young Min Yang; Olympia A. Kalagidis; Ilir Zenku; Donald Saner; Neil Bahroos; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2015)

Challenges and remediation for Patient Safety Indicators in the transition to ICD-10-CM. - Andrew D. Boyd; Young Min Yang; Jianrong Li; Colleen Kenost; Mike D. Burton; Bryan Becker; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2015)

Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes. - Vincent Gardeux; Anthony Bosco; Jianrong Li; Marilyn J. Halonen; Daniel Jackson 003; Fernando D. Martinez; Yves A. Lussier (J. Biomed. Informatics, 2015)

eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs. - Haiquan Li; Nima Pouladi; Ikbel Achour; Vincent Gardeux; Jianrong Li; Qike Li; Hao Helen Zhang; Fernando D. Martinez; Joe G. N. 'Skip' Garcia; Yves A. Lussier (J. Biomed. Informatics, 2015)

Editorial: Big Data for Health. - R. Atun; Yves A. Lussier; Carmen C. Y. Poon; Stephen T. C. Wong; Guang-Zhong Yang (IEEE J. Biomed. Health Informatics, 2015)

Analysis of aggregated cell-cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells. - A. Grant Schissler; Qike Li; James L. Chen; Colleen Kenost; Ikbel Achour; Dean Billheimer; Haiquan Li; Walter W. Piegorsch; Yves A. Lussier (Bioinform., 2016)

Rethinking the role and impact of health information technology: informatics as an interventional discipline. - Philip R. O. Payne; Yves A. Lussier; Randi E. Foraker; Peter J. Embí (BMC Medical Informatics Decis. Mak., 2016)

Word-of-Mouth Innovation: Hypothesis Generation for Supplement Repurposing based on Consumer Reviews. - Jung-wei Fan; Yves A. Lussier (AMIA, 2017)

Graph-based Clustering of ICD-10 Codes with Alternative Semantic Contexts. - Jung-wei Fan; Jianrong Li; Yves A. Lussier (CRI, 2017)

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. - Vincent Gardeux; Joanne Berghout; Ikbel Achour; A. Grant Schissler; Qike Li; Colleen Kenost; Jianrong Li; Yuan Shang; Anthony Bosco; Donald Saner; Marilyn J. Halonen; Daniel Jackson 003; et al. (J. Am. Medical Informatics Assoc., 2017)

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. - Qike Li; A. Grant Schissler; Vincent Gardeux; Joanne Berghout; Ikbel Achour; Colleen Kenost; Haiquan Li; Hao Helen Zhang; Yves A. Lussier (J. Biomed. Informatics, 2017)

Systems of Phenome-Exposome Associations Unveiled by Mining Practice-Based Evidence with Environmental Exposures. - Jung-wei Fan; Samir Rachid Zaim; Walter W. Piegorsch; Jianrong Li; Colleen Kenost; Yves A. Lussier (AMIA, 2018)

Single subject transcriptome analysis to identify functionally signed gene set or pathway activity. - Joanne Berghout; Qike Li; Nima Pouladi; Jianrong Li; Yves A. Lussier (PSB, 2018)

Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements. - Jiali Han; Jianrong Li; Ikbel Achour; Lorenzo L. Pesce; Ian T. Foster; Haiquan Li; Yves A. Lussier (PSB, 2018)

Session Introduction. - Yves A. Lussier; Joanne Berghout; Francesca Vitali; Kenneth S. Ramos; Maricel G. Kann; Jason H. Moore (PSB, 2018)

Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses. - Samir Rachid Zaim; Qike Li; A. Grant Schissler; Yves A. Lussier (PSB, 2018)

Physician nurse care: A new use of UMLS to measure professional contribution: Are we talking about the same patient a new graph matching algorithm? - Andrew D. Boyd; Karen Dunn Lopez; Camillo Lugaresi; Tamara Goncalves Rezende Macieira; Vanessa Sousa; Sabita Acharya; Abhinaya Balasubramanian; Khawllah Roussi; Gail M. Keenan; Yves A. Lussier; Jianrong John Li; Michel Burton; et al. (Int. J. Medical Informatics, 2018)

Clinical Ontologies. - Yves A. Lussier; James L. Chen (Encyclopedia of Database Systems (2nd ed.), 2018)

Interoperation of NLP-Based Systems with Clinical Databases. - Yves A. Lussier; Matthew G. Crowson (Encyclopedia of Database Systems (2nd ed.), 2018)

Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes. - Qike Li; Samir Rachid Zaim; Dillon Aberasturi; Joanne Berghout; Haiquan Li; Francesca Vitali; Colleen Kenost; Hao Helen Zhang; Yves A. Lussier (AMIA, 2019)

DSL-TEACH: Data Science Literacy Training to Enhance Approaches for Clinical decision-making in Healthcare. - Samir Rachid Zaim; Ahyoung Amy Kim; Colleen Kenost; Helen Zhang; Yves A. Lussier; Vignesh Subbian (AMIA, 2019)

Reading between the genes: interpreting non-coding DNA in high-throughput. - Joanne Berghout; Yves A. Lussier; Francesca Vitali; Martha L. Bulyk; Maricel G. Kann; Jason H. Moore (PSB, 2019)

Translational informatics of population Health: How large biomolecular and clinical datasets unite. - Yves A. Lussier; Atul J. Butte; Haiquan Li; Rong Chen; Jason H. Moore (PSB, 2019)

Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. - Francesca Vitali; Joanne Berghout; Jung-wei Fan; Jianrong Li; Qike Li; Haiquan Li; Yves A. Lussier (PSB, 2019)

Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes. - Francesca Vitali; Qike Li; A. Grant Schissler; Joanne Berghout; Colleen Kenost; Yves A. Lussier (Briefings Bioinform., 2019)

binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions. - Samir Rachid Zaim; Colleen Kenost; Joanne Berghout; Wesley Chiu; Liam Wilson; Hao Helen Zhang; Yves A. Lussier (BMC Bioinform., 2020)

Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions. - Samir Rachid Zaim; Colleen Kenost; Joanne Berghout; Wesley Chiu; Liam Wilson; Hao Helen Zhang; Yves A. Lussier (BMC Bioinform., 2020)

'Single-subject studies'-derived analyses unveil altered biomechanisms between very small cohorts: implications for rare diseases. - Dillon Aberasturi; Nima Pouladi; Samir Rachid Zaim; Colleen Kenost; Joanne Berghout; Walter W. Piegorsch; Yves A. Lussier (Bioinform., 2021)

Enabling Transcriptome Classification in Micro-cohorts with Pathway-Anchoring and Single-Subject Studies. - Mahdieh Shabanian; Nima Pouladi; Liam S. Wilson; Mattia Prosperi; Yves A. Lussier (AIME (2), 2025)