Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips. - Yonghong Wang; Ze-Hong Miao; Yves Pommier; Ernest S. Kawasaki; Audrey Player (Bioinform., 2007)

Ontogenomic study of the relationship between number of gene splice variants and GO categorization. - Ari B. Kahn; Barry Zeeberg; Michael C. Ryan; D. Curtis Jamison; David M. Rockoff; Yves Pommier; John N. Weinstein (Bioinform., 2010)

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis. - Barry Zeeberg; Hongfang Liu; Ari B. Kahn; Martin Ehler; Vinodh N. Rajapakse; Robert F. Bonner; Jacob D. Brown; Brian P. Brooks; Vladimir L. Larionov; William C. Reinhold; John N. Weinstein; Yves Pommier (BMC Bioinform., 2011)

Predicting expression-related features of chromosomal domain organization with network-structured analysis of gene expression and chromosomal location. - Vinodh N. Rajapakse; Wojciech Czaja; Yves Pommier; William C. Reinhold; Sudhir Varma (BCB, 2012)

Development of purely structure-based pharmacophores for the topoisomerase I-DNA-ligand binding pocket. - Malgorzata N. Drwal; Keli Agama; Yves Pommier; Renate Griffith (J. Comput. Aided Mol. Des., 2013)

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R. - Augustin Luna; Vinodh N. Rajapakse; Fabricio G. Sousa; Jianjiong Gao; Nikolaus Schultz; Sudhir Varma; William C. Reinhold; Chris Sander; Yves Pommier (Bioinform., 2016)

CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics. - Augustin Luna; Fathi Elloumi; Sudhir Varma; Yanghsin Wang; Vinodh N. Rajapakse; Mirit I. Aladjem; Jacques Robert; Chris Sander; Yves Pommier; William C. Reinhold (Nucleic Acids Res., 2021)