VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering. - Bie M. P. Verbist; Kim Thys; Joke Reumers; Yves Wetzels; Koen Van der Borght; Willem Talloen; Jeroen Aerssens; Lieven Clement; Olivier Thas (Bioinform., 2015)

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles. - Koen Van der Borght; Kim Thys; Yves Wetzels; Lieven Clement; Bie M. P. Verbist; Joke Reumers; Herman van Vlijmen; Jeroen Aerssens (BMC Bioinform., 2015)

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering. - Bie M. P. Verbist; Lieven Clement; Joke Reumers; Kim Thys; Alexander Vapirev; Willem Talloen; Yves Wetzels; Joris Meys; Jeroen Aerssens; Luc Bijnens; Olivier Thas (BMC Bioinform., 2015)