A new approach to time-frequency localized signal design. - Ahmet Kemal Özdemir; Zafer Aydin; Orhan Arikan (ICASSP, 2002)

Protein secondary structure prediction with semi Markov HMMs. - Zafer Aydin; Yücel Altunbasak; Mark Borodovsky (ICASSP (5), 2004)

A modified stack decoder for protein secondary structure prediction. - Zafer Aydin; Toygar Akgun; Yucel Altunbasak (ICASSP (4), 2005)

Protein secondary structure prediction for a single-sequence using hidden semi-Markov models. - Zafer Aydin; Yucel Altunbasak; Mark Borodovsky (BMC Bioinform., 2006)

A signal processing application in genomic research: protein secondary structure prediction. - Zafer Aydin; Yucel Altunbasak (IEEE Signal Process. Mag., 2006)

Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure. - Zafer Aydin; Hakan Erdogan; Yucel Altunbasak (ICASSP (1), 2007)

Bayesian Protein Secondary Structure Prediction With Near-Optimal Segmentations. - Zafer Aydin; Yucel Altunbasak; Hakan Erdogan (IEEE Trans. Signal Process., 2007)

Bayesian models and algoritms for protein secondary structure and beta-sheet prediction. - Zafer Aydin (2008)

Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo. - Zafer Aydin; John I. Murray; Robert H. Waterston; William Stafford Noble (BMC Bioinform., 2010)

Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure. - Zafer Aydin; Ajit P. Singh; Jeff A. Bilmes; William Stafford Noble (BMC Bioinform., 2011)

Bayesian Models and Algorithms for Protein β-Sheet Prediction. - Zafer Aydin; Yucel Altunbasak; Hakan Erdogan (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

A method for extraction of affective audio-visual facial clips from movies. - Cigdem Turan; Can Kansin; Sara Zhalehpour; Zafer Aydin; Cigdem Eroglu Erdem (SIU, 2013)

Constructing Structural Profiles for Protein Torsion Angle Prediction. - Zafer Aydin; David Baker 001; William Stafford Noble (BIOINFORMATICS, 2015)

Template Scoring Methods for Protein Torsion Angle Prediction. - Zafer Aydin; David Baker 001; William Stafford Noble (BIOSTEC (Selected Papers), 2015)

BAUM-2: a multilingual audio-visual affective face database. - Cigdem Eroglu Erdem; Cigdem Turan; Zafer Aydin (Multim. Tools Appl., 2015)

Protein β-sheet prediction using an efficient dynamic programming algorithm. - Mostafa Sabzekar; Mahmoud Naghibzadeh; Mahdie Eghdami; Zafer Aydin (Comput. Biol. Chem., 2017)

ROI Detection in Mammogram Images Using Wavelet-Based Haralick and HOG Features. - Sena Busra Yengec Tasdemir; Kasim Tasdemir; Zafer Aydin (ICMLA, 2018)

Comparison of NR and UniClust databases for protein secondary structure prediction. - Zafer Aydin; Oguz Kaynar; Yasin Gormez (SIU, 2018)

Comparison of machine learning classifiers for protein secondary structure prediction. - Zafer Aydin; Oguz Kaynar; Yasin Gormez; Yunus Emre Isik (SIU, 2018)

Dimensionality reduction for protein secondary structure and solvent accesibility prediction. - Zafer Aydin; Oguz Kaynar; Yasin Gormez (J. Bioinform. Comput. Biol., 2018)

Developing structural profile matrices for protein secondary structure and solvent accessibility prediction. - Zafer Aydin; Nuh Azginoglu; Halil Ibrahim Bilgin; Mete Celik (Bioinform., 2019)

Metabolic Imaging Based Sub-Classification of Lung Cancer. - Mustafa Bicakci; Oguzhan Ayyildiz; Zafer Aydin; Alper Bastürk; Seyhan Karaçavus; Bülent Yilmaz (IEEE Access, 2020)

Lung cancer subtype differentiation from positron emission tomography images. - Oguzhan Ayyildiz; Zafer Aydin; Bülent Yilmaz; Seyhan Karaçavus; Kübra Senkaya; Semra Içer; Arzu Tasdemir; Eser Kaya (Turkish J. Electr. Eng. Comput. Sci., 2020)

A deep learning approach with Bayesian optimization and ensemble classifiers for detecting denial of service attacks. - Yasin Gormez; Zafer Aydin; Ramazan Karademir; Vehbi C. Gungor (Int. J. Commun. Syst., 2020)

Structural profile matrices for predicting structural properties of proteins. - Nuh Azginoglu; Zafer Aydin; Mete Celik (J. Bioinform. Comput. Biol., 2020)

A review of mammographic region of interest classification. - Sena Busra Yengec Tasdemir; Kasim Tasdemir; Zafer Aydin (WIREs Data Mining Knowl. Discov., 2020)

Data Mining Techniques in Direct Marketing on Imbalanced Data using Tomek Link Combined with Random Under-sampling. - Ümit Yilmaz; Cengiz Gezer; Zafer Aydin; Vehbi Çagri Güngör (ICISDM, 2021)

Effect of interpolation on specular reflections in texture-based automatic colonic polyp detection. - Rukiye Nur Kaçmaz; Bülent Yilmaz; Zafer Aydin (Int. J. Imaging Syst. Technol., 2021)

Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge. - Solveig K. Sieberts; Jennifer Schaff; Marlena Duda; Bálint Á Pataki; Ming Sun; Phil Snyder; Jean-Francois Daneault; Federico Parisi; Gianluca Costante; Udi Rubin; Peter Banda; Yooree Chae; et al. (npj Digit. Medicine, 2021)

A noise-aware feature selection approach for classification. - Mostafa Sabzekar; Zafer Aydin (Soft Comput., 2021)

Camera-based wildfire smoke detection for foggy environments. - Merve Tas; Yusuf Tas; Oguzhan Balki; Zafer Aydin; Kasim Tasdemir (J. Electronic Imaging, 2022)

The Determination of Distinctive Single Nucleotide Polymorphism Sets for the Diagnosis of Behçet's Disease. - Yunus Emre Isik; Yasin Görmez; Zafer Aydin; Burcu Bakir-Gungor (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

IGPRED-MultiTask: A Deep Learning Model to Predict Protein Secondary Structure, Torsion Angles and Solvent Accessibility. - Yasin Görmez; Zafer Aydin (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Improved classification of colorectal polyps on histopathological images with ensemble learning and stain normalization. - Sena Busra Yengec Tasdemir; Zafer Aydin; Ebru Akay; Serkan Dogan; Bülent Yilmaz (Comput. Methods Programs Biomed., 2023)

An effective colorectal polyp classification for histopathological images based on supervised contrastive learning. - Sena Busra Yengec Tasdemir; Zafer Aydin; Ebru Akay; Serkan Dogan; Bülent Yilmaz (Comput. Biol. Medicine, 2024)

Network intrusion detection based on machine learning strategies: performance comparisons on imbalanced wired, wireless, and software-defined networking (SDN) network traffics. - Hilal Hacilar; Zafer Aydin; Vehbi Çagri Güngör (Turkish J. Electr. Eng. Comput. Sci., 2024)