Efficient Green's Function Reaction Dynamics (GFRD) simulations for diffusion-limited, reversible reactions. - Zahedeh Bashardanesh; Per Lötstedt (J. Comput. Phys., 2018)

Making Soup: Preparing and Validating Models of the Bacterial Cytoplasm for Molecular Simulation. - Leandro Oliveira Bortot; Zahedeh Bashardanesh; David van der Spoel (J. Chem. Inf. Model., 2020)