Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. - Zaky Adam; Monique Turmel; Claude Lemieux; David Sankoff (J. Comput. Biol., 2007)

Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. - Chunfang Zheng; Qian Zhu 002; Zaky Adam; David Sankoff (ISMB, 2008)

Issues in the Reconstruction of Gene Order Evolution. - David Sankoff; Chunfang Zheng; Adriana Muñoz; Zhenyu Yang; Zaky Adam; Robert Warren; Vicky Choi; Qian Zhu 002 (J. Comput. Sci. Technol., 2009)

Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution. - Qian Zhu 002; Zaky Adam; Vicky Choi; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances. - Zaky Adam; David Sankoff (J. Comput. Biol., 2010)