Reversal and Transposition Distance of Linear Chromosomes. - Maria Emília Telles Walter; Zanoni Dias; João Meidanis (SPIRE, 1998)

A New Approach for Approximating the Tranposition Distance. - Maria Emília Telles Walter; Zanoni Dias; João Meidanis (SPIRE, 2000)

Genome Rearrangements Distance by Fusion, Fission, and Transposition is Easy. - Zanoni Dias; João Meidanis (SPIRE, 2001)

Sorting by Prefix Transpositions. - Zanoni Dias; João Meidanis (SPIRE, 2002)

A Lower Bound on the Reversal and Transposition Diameter. - João Meidanis; Maria Emília Telles Walter; Zanoni Dias (J. Comput. Biol., 2002)

Rearranjo de genomas: uma coletanea de artigos. - Zanoni Dias (2002)

The Syntenic Distance Problem Using Only Fusions and Fussions. - Zanoni Dias; João Meidanis (WOB, 2003)

New EST Trimming Strategy. - Christian Baudet; Zanoni Dias (BSB, 2005)

Comparison of Genomic DNA to cDNA Alignment Methods. - Miguel Galves; Zanoni Dias (BSB, 2005)

New EST Trimming Procedure Applied to SUCEST Sequences. - Christian Baudet; Zanoni Dias (BSB, 2007)

Transposition Distance Based on the Algebraic Formalism. - Cleber V. G. Mira; Zanoni Dias; Hederson P. Santos; Guilherme A. Pinto; Maria Emília M. T. Walter (BSB, 2008)

Constraint Programming Models for Transposition Distance Problem. - Ulisses Dias; Zanoni Dias (BSB, 2009)

An improved 1.375-approximation algorithm for the transposition distance problem. - Ulisses Dias; Zanoni Dias (BCB, 2010)

A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. - Ulisses Dias; Zanoni Dias; João C. Setubal (RECOMB-CG, 2010)

An improved algorithm to enumerate all traces that sort a signed permutation by reversals. - Christian Baudet; Zanoni Dias (SAC, 2010)

First steps toward image phylogeny. - Zanoni Dias; Anderson Rocha 001; Siome Goldenstein (WIFS, 2010)

Cassis: detection of genomic rearrangement breakpoints. - Christian Baudet; Claire Lemaitre; Zanoni Dias; Christian Gautier; Eric Tannier; Marie-France Sagot (Bioinform., 2010)

Partial enumeration of solutions traces for the problem of sorting by signed reversals. - Christian Baudet; Zanoni Dias (BCB, 2011)

Using inversion signatures to generate draft genome sequence scaffolds. - Zanoni Dias; Ulisses Dias; João C. Setubal (BCB, 2011)

Computing rearrangement distance of every permutation in the symmetric group. - Gustavo Rodrigues Galvão; Zanoni Dias (SAC, 2011)

Video Phylogeny: Recovering near-duplicate video relationships. - Zanoni Dias; Anderson Rocha 001; Siome Goldenstein (WIFS, 2011)

Improvements to a Multiple Protein Sequence Alignment Tool. - André Atanasio M. Almeida; Zanoni Dias (BIOINFORMATICS, 2012)

Sorting genomes using almost-symmetric inversions. - Zanoni Dias; Ulisses Dias; Lenwood S. Heath; João C. Setubal (SAC, 2012)

On the Approximation Ratio of Algorithms for Sorting by Transpositions without Using Cycle Graphs. - Gustavo Rodrigues Galvão; Zanoni Dias (BSB, 2012)

Sampling solution traces for the problem of sorting permutations by signed reversals. - Christian Baudet; Zanoni Dias; Marie-France Sagot (Algorithms Mol. Biol., 2012)

SIS: a program to generate draft genome sequence scaffolds for prokaryotes. - Zanoni Dias; Ulisses Dias; João C. Setubal (BMC Bioinform., 2012)

Image Phylogeny by Minimal Spanning Trees. - Zanoni Dias; Anderson Rocha 001; Siome Goldenstein (IEEE Trans. Inf. Forensics Secur., 2012)

Heuristics for the Sorting by Length-Weighted Inversion Problem. - Thiago da Silva Arruda; Ulisses Dias; Zanoni Dias (BCB, 2013)

Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions. - Ulisses Dias; Christian Baudet; Zanoni Dias (BCB, 2013)

Large-Scale Image Phylogeny: Tracing Image Ancestral Relationships. - Zanoni Dias; Siome Goldenstein; Anderson Rocha 001 (IEEE Multim., 2013)

Heuristics for the Transposition Distance Problem. - Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2013)

Exploring heuristic and optimum branching algorithms for image phylogeny. - Zanoni Dias; Siome Goldenstein; Anderson Rocha 001 (J. Vis. Commun. Image Represent., 2013)

Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations. - Thiago da Silva Arruda; Ulisses Dias; Zanoni Dias (AlCoB, 2014)

On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions. - Carla Negri Lintzmayer; Zanoni Dias (AlCoB, 2014)

On the Diameter of Rearrangement Problems. - Carla Negri Lintzmayer; Zanoni Dias (AlCoB, 2014)

An improved algorithm for the sorting by reversals and transpositions problem. - Ulisses Dias; Andre Rodrigues Oliveira; Zanoni Dias (BCB, 2014)

Approximation algorithms for sorting by signed short reversals. - Gustavo Rodrigues Galvão; Zanoni Dias (BCB, 2014)

Multiple parenting identification in image phylogeny. - Alberto A. de Oliveira; Pasquale Ferrara; Alessia De Rosa; Alessandro Piva; Mauro Barni; Siome Goldenstein; Zanoni Dias; Anderson Rocha 001 (ICIP, 2014)

Sorting Permutations by Prefix and Suffix Versions of Reversals and Transpositions. - Carla Negri Lintzmayer; Zanoni Dias (LATIN, 2014)

Length and Symmetry on the Sorting by Weighted Inversions Problem. - Christian Baudet; Ulisses Dias; Zanoni Dias (BSB, 2014)

A general heuristic for genome rearrangement problems. - Ulisses Dias; Gustavo Rodrigues Galvão; Carla Negri Lintzmayer; Zanoni Dias (J. Bioinform. Comput. Biol., 2014)

An Audit Tool for Genome Rearrangement Algorithms. - Gustavo Rodrigues Galvão; Zanoni Dias (ACM J. Exp. Algorithmics, 2014)

On Alternative Approaches for Approximating the Transposition Distance. - Gustavo Rodrigues Galvão; Zanoni Dias (J. Univers. Comput. Sci., 2014)

Image Phylogeny Forests Reconstruction. - Filipe de Oliveira Costa; Marina A. Oikawa; Zanoni Dias; Siome Goldenstein; Anderson de Rezende Rocha (IEEE Trans. Inf. Forensics Secur., 2014)

Phylogeny reconstruction for misaligned and compressed video sequences. - Filipe de Oliveira Costa; S. Lameri; Paolo Bestagini; Zanoni Dias; Anderson Rocha 001; Marco Tagliasacchi; Stefano Tubaro (ICIP, 2015)

Sorting Signed Circular Permutations by Super Short Reversals. - Gustavo Rodrigues Galvão; Christian Baudet; Zanoni Dias (ISBRA, 2015)

Sorting signed permutations by short operations. - Gustavo Rodrigues Galvão; Orlando Lee; Zanoni Dias (Algorithms Mol. Biol., 2015)

Sorting by Prefix Reversals and Prefix Transpositions. - Zanoni Dias; Ulisses Dias (Discret. Appl. Math., 2015)

Approximation algorithms for sorting by length-weighted prefix and suffix operations. - Carla Negri Lintzmayer; Guillaume Fertin; Zanoni Dias (Theor. Comput. Sci., 2015)

Sorting by weighted inversions considering length and symmetry. - Christian Baudet; Ulisses Dias; Zanoni Dias (BMC Bioinform., 2015)

Hash-based frame selection for video phylogeny. - Filipe de Oliveira Costa; Silvia Lameri; Paolo Bestagini; Zanoni Dias; Stefano Tubaro; Anderson Rocha 001 (WIFS, 2016)

Distances in multimedia phylogeny. - Marina A. Oikawa; Zanoni Dias; Anderson Rocha 001; Siome Goldenstein (Int. Trans. Oper. Res., 2016)

Manifold Learning and Spectral Clustering for Image Phylogeny Forests. - Marina A. Oikawa; Zanoni Dias; Anderson de Rezende Rocha; Siome Goldenstein (IEEE Trans. Inf. Forensics Secur., 2016)

Multiple Parenting Phylogeny Relationships in Digital Images. - Alberto A. de Oliveira; Pasquale Ferrara; Alessia De Rosa; Alessandro Piva; Mauro Barni; Siome Goldenstein; Zanoni Dias; Anderson Rocha 001 (IEEE Trans. Inf. Forensics Secur., 2016)

Sorting permutations by prefix and suffix rearrangements. - Carla Negri Lintzmayer; Guillaume Fertin; Zanoni Dias (J. Bioinform. Comput. Biol., 2017)

On the Sorting by Reversals and Transpositions Problem. - Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Univers. Comput. Sci., 2017)

New dissimilarity measures for image phylogeny reconstruction. - Filipe de Oliveira Costa; Alberto A. de Oliveira; Pasquale Ferrara; Zanoni Dias; Siome Goldenstein; Anderson Rocha 001 (Pattern Anal. Appl., 2017)

Sorting Circular Permutations by Super Short Reversals. - Gustavo Rodrigues Galvão; Christian Baudet; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Breaking down violence: A deep-learning strategy to model and classify violence in videos. - Bruno Malveira Peixoto; Sandra Avila; Zanoni Dias; Anderson Rocha 001 (ARES, 2018)

Approximation Algorithms for Sorting Permutations by Fragmentation-Weighted Operations. - Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (AlCoB, 2018)

Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem. - Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2018)

Sorting Permutations by Limited-Size Operations. - Guilherme Henrique Santos Miranda; Carla Negri Lintzmayer; Zanoni Dias (AlCoB, 2018)

Sorting λ-Permutations by λ-Operations. - Guilherme Henrique Santos Miranda; Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (BSB, 2018)

Super Short Reversals on Both Gene Order and Intergenic Sizes. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (BSB, 2018)

Sorting signed circular permutations by super short operations. - Andre Rodrigues Oliveira; Guillaume Fertin; Ulisses Dias; Zanoni Dias (Algorithms Mol. Biol., 2018)

A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem. - Thiago da Silva Arruda; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Sorting permutations and binary strings by length-weighted rearrangements. - Carla Negri Lintzmayer; Guillaume Fertin; Zanoni Dias (Theor. Comput. Sci., 2018)

Toward Subjective Violence Detection in Videos. - Bruno Peixoto; Bahram Lavi; João Paulo Pereira Martin; Sandra Avila; Zanoni Dias; Anderson Rocha 001 (ICASSP, 2019)

Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. - Klairton Lima Brito; Géraldine Jean; Guillaume Fertin; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (ISBRA, 2019)

Image Semantic Representation for Event Understanding. - Caroline Mazini Rodrigues; Luís A. M. Pereira; Anderson Rocha 001; Zanoni Dias (WIFS, 2019)

Block-Interchange Distance Considering Intergenic Regions. - Ulisses Dias; Andre Rodrigues Oliveira; Klairton Lima Brito; Zanoni Dias (BSB, 2019)

Super short operations on both gene order and intergenic sizes. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (Algorithms Mol. Biol., 2019)

Approximation Algorithms for Sorting Permutations by Length-Weighted Short Rearrangements. - Alexsandro Oliveira Alexandrino; Guilherme Henrique Santos Miranda; Carla Negri Lintzmayer; Zanoni Dias (LAGOS, 2019)

A GRASP for the Convex Recoloring Problem in Graphs. - Ana Paula dos Santos Dantas; Cid Carvalho de Souza; Zanoni Dias (LAGOS, 2019)

Sorting by Weighted Reversals and Transpositions. - Andre Rodrigues Oliveira; Klairton Lima Brito; Zanoni Dias; Ulisses Dias (J. Comput. Biol., 2019)

On the Complexity of Sorting by Reversals and Transpositions Problems. - Andre Rodrigues Oliveira; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2019)

Sorting Permutations by λ-Operations. - Guilherme Henrique Santos Miranda; Carla Negri Lintzmayer; Zanoni Dias (J. Univers. Comput. Sci., 2019)

Hierarchical Clustering-Based Graphs for Large Scale Approximate Nearest Neighbor Search. - Javier Alvaro Vargas Muñoz; Marcos André Gonçalves; Zanoni Dias; Ricardo da Silva Torres (Pattern Recognit., 2019)

A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (AlCoB, 2020)

Heuristics for Reversal Distance Between Genomes with Duplicated Genes. - Gabriel Siqueira; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (AlCoB, 2020)

Multimodal Violence Detection in Videos. - Bruno Peixoto; Bahram Lavi; Paolo Bestagini; Zanoni Dias; Anderson Rocha 001 (ICASSP, 2020)

Ensemble of Bidirectional Recurrent Networks and Random Forests for Protein Secondary Structure Prediction. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (IWSSIP, 2020)

DuaLAnet: Dual Lesion Attention Network for Thoracic Disease Classification in Chest X-Rays. - Vinicius Teixeira; Leodécio Braz; Hélio Pedrini; Zanoni Dias (IWSSIP, 2020)

Fusion of BLAST and Ensemble of Classifiers for Protein Secondary Structure Prediction. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (SIBGRAPI, 2020)

ImTeNet: Image-Text Classification Network for Abnormality Detection and Automatic Reporting on Musculoskeletal Radiographs. - Leodécio Braz; Vinicius Teixeira; Hélio Pedrini; Zanoni Dias (BSB, 2020)

Sorting by Reversals and Transpositions with Proportion Restriction. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2020)

COVID-19 X-ray Image Diagnostic with Deep Neural Networks. - Gabriel Bianchin de Oliveira; Rafael Padilha; André Dorte; Luis Cereda; Luiz Miyazaki; Maurício Lopes; Zanoni Dias (BSB, 2020)

Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems. - Pedro Olímpio Pinheiro; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Cid Carvalho de Souza; Zanoni Dias (BSB, 2020)

Classification of Musculoskeletal Abnormalities with Convolutional Neural Networks. - Guilherme Tiaki Sassai Sato; Leodécio Braz da Silva Segundo; Zanoni Dias (BSB, 2020)

Forensic Event Analysis: From Seemingly Unrelated Data to Understanding. - Rafael Padilha; Caroline Mazini Rodrigues; Fernanda A. Andaló; Gabriel Bertocco; Zanoni Dias; Anderson Rocha 001 (IEEE Secur. Priv., 2020)

Sorting permutations by fragmentation-weighted operations. - Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (J. Bioinform. Comput. Biol., 2020)

Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes. - Klairton Lima Brito; Géraldine Jean; Guillaume Fertin; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2020)

On the Complexity of Some Variations of Sorting by Transpositions. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Univers. Comput. Sci., 2020)

Heuristics for the Reversal and Transposition Distance Problem. - Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2021)

Reversals Distance Considering Flexible Intergenic Regions Sizes. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2021)

Authentication of Vincent van Gogh's Work. - Lucas Oliveira David; Hélio Pedrini; Zanoni Dias; Anderson Rocha 001 (CAIP (2), 2021)

MMEC: Multi-Modal Ensemble Classifier for Protein Secondary Structure Prediction. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (CAIP (1), 2021)

Data-Augmented Emoji Approach to Sentiment Classification of Tweets. - Tiago Martinho de Barros; Hélio Pedrini; Zanoni Dias (CIARP, 2021)

Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (LAGOS, 2021)

Leveraging emoji to improve sentiment classification of tweets. - Tiago Martinho de Barros; Hélio Pedrini; Zanoni Dias (SAC, 2021)

Protein secondary structure prediction based on fusion of machine learning classifiers. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (SAC, 2021)

Connoisseur: Provenance Analysis in Paintings. - Lucas Oliveira David; Hélio Pedrini; Zanoni Dias; Anderson Rocha 001 (SSCI, 2021)

Deep Learning-Based COVID-19 Diagnostics of Low-Quality CT Images. - Daniel Ferber; Felipe Vieira; João Dalben; Mariana Ferraz; Nicholas Sato; Gabriel Bianchin de Oliveira; Rafael Padilha; Zanoni Dias (BSB, 2021)

Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes. - Gabriel Siqueira; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Zanoni Dias (BSB, 2021)

Approximation Algorithms for Sorting λ-Permutations by λ-Operations. - Guilherme Henrique Santos Miranda; Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (Algorithms, 2021)

An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (Algorithms Mol. Biol., 2021)

Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Zanoni Dias (Algorithms Mol. Biol., 2021)

Incorporating intergenic regions into reversal and transposition distances with indels. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2021)

Reversals and transpositions distance with proportion restriction. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2021)

Genome Rearrangement Distance with Reversals, Transpositions, and Indels. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2021)

Length-weighted λ-rearrangement distance. - Alexsandro Oliveira Alexandrino; Guilherme Henrique Santos Miranda; Carla Negri Lintzmayer; Zanoni Dias (J. Comb. Optim., 2021)

Harnessing high-level concepts, visual, and auditory features for violence detection in videos. - Bruno Malveira Peixoto; Bahram Lavi; Zanoni Dias; Anderson Rocha 001 (J. Vis. Commun. Image Represent., 2021)

Sorting Signed Permutations by Intergenic Reversals. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Klairton Lima Brito; Laurent Bulteau; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Sorting Permutations by Intergenic Operations. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Heuristics for Genome Rearrangement Distance With Replicated Genes. - Gabriel Siqueira; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Manifold Learning for Real-World Event Understanding. - Caroline Mazini Rodrigues; Aurea Soriano-Vargas; Bahram Lavi; Anderson Rocha 001; Zanoni Dias (IEEE Trans. Inf. Forensics Secur., 2021)

Protein Molecular Function Annotation Based on Transformer Embeddings. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (BRACIS (2), 2022)

MinMax-CAM: Increasing Precision of Explaining Maps by Contrasting Gradient Signals and Regularizing Kernel Usage. - Lucas David 001; Hélio Pedrini; Zanoni Dias (VISIGRAPP (Revised Selected Papers), 2022)

Ensemble of Patches for COVID-19 X-Ray Image Classification. - Thiago Dong Chen; Gabriel Bianchin de Oliveira; Zanoni Dias (ICAART (3), 2022)

Bias Assessment in Medical Imaging Analysis: A Case Study on Retinal OCT Image Classification. - Gabriel Bianchin de Oliveira; Lucas David 001; Rafael Padilha; Ana Paula da Silva; Francine de Paula; Lucas Infante; Lucio Jorge; Patricia Xavier; Zanoni Dias (ICAART (3), 2022)

Prediction of Protein Molecular Functions Using Transformers. - Felipe Lopes de Mello; Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (ICAISC (2), 2022)

Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (ISBRA, 2022)

A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2022)

Sorting by k-Cuts on Signed Permutations. - Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2022)

MinMax-CAM: Improving Focus of CAM-based Visualization Techniques in Multi-label Problems. - Lucas Oliveira David; Hélio Pedrini; Zanoni Dias (VISIGRAPP (4: VISAPP), 2022)

A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2022)

Algorithms for the Maximum Eulerian Cycle Decomposition Problem. - Pedro Olímpio Pinheiro; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Cid C. de Souza; Zanoni Dias (CoRR, 2022)

A heuristic for the convex recoloring problem in graphs. - Ana Paula dos Santos Dantas; Cid C. de Souza; Zanoni Dias (Int. Trans. Oper. Res., 2022)

Labeled Cycle Graph for Transposition and Indel Distance. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2022)

A genetic programming approach for searching on nearest neighbors graphs. - Javier Alvaro Vargas Muñoz; Zanoni Dias; Ricardo da Silva Torres (Multim. Tools Appl., 2022)

CAFA3 based dataset. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (Zenodo, 2022)

The Multi-attribute Fairer Cover Problem. - Ana Paula dos Santos Dantas; Gabriel Bianchin de Oliveira; Hélio Pedrini; Cid C. de Souza; Zanoni Dias (BRACIS (1), 2023)

Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Zanoni Dias (ISBRA, 2023)

Adversarial Feature Hallucination in a Supervised Contrastive Space for Few-Shot Learning of Provenance in Paintings. - Lucas David 001; Luis Liborio; Guilherme Paiva; Marianna Severo; Eduardo Valle; Hélio Pedrini; Zanoni Dias (LA-CCI, 2023)

Sleep-Wake Classification using Recurrence Plots from Smartwatch Accelerometer Data. - Rebeca Padovani Ederli; Didier A. Vega-Oliveros; Aurea Soriano-Vargas; Anderson Rocha 001; Zanoni Dias (LA-CCI, 2023)

Algorithmic Fairness Applied to the Multi-Label Classification Problem. - Ana Paula dos Santos Dantas; Gabriel Bianchin de Oliveira; Daiane Mendes de Oliveira; Hélio Pedrini; Cid C. de Souza; Zanoni Dias (VISIGRAPP (5: VISAPP), 2023)

Block Interchange and Reversal Distance on Unbalanced Genomes. - Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2023)

P-NOC: Adversarial CAM Generation for Weakly Supervised Semantic Segmentation. - Lucas David 001; Hélio Pedrini; Zanoni Dias (CoRR, 2023)

Approximation algorithms for sorting by k-cuts on signed permutations. - Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (J. Comb. Optim., 2023)

Reversal and Indel Distance With Intergenic Region Information. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Rearrangement distance with reversals, indels, and moves in intergenic regions on signed and unsigned permutations. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2023)

Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2023)

Signed rearrangement distances considering repeated genes, intergenic regions, and indels. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Zanoni Dias (J. Comb. Optim., 2023)

TEMPROT: protein function annotation using transformers embeddings and homology search. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (BMC Bioinform., 2023)

Integrating Transformers and AutoML for Protein Function Prediction. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (EMBC, 2024)

Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2024)

Scaling Up ESM2 Architectures for Long Protein Sequences Analysis: Long and Quantized Approaches. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (BSB, 2024)

Heuristics based on Adjacency Graph Packing for DCJ Distance Considering Intergenic Regions. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Zanoni Dias (BSB, 2024)

P-NOC: Adversarial training of CAM generating networks for robust weakly supervised semantic segmentation priors. - Lucas Oliveira David; Hélio Pedrini; Zanoni Dias (J. Vis. Commun. Image Represent., 2024)

CAFA5. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (Zenodo, 2024)

CAFA5. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (Zenodo, 2024)

Rearrangement Distance Problems: An updated survey. - Andre Rodrigues Oliveira; Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Ulisses Dias; Zanoni Dias (ACM Comput. Surv., 2024)

Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs. - Gabriel Siqueira; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Zanoni Dias (J. Heuristics, 2024)

Learning Weakly Supervised Semantic Segmentation Through Cross-Supervision and Contrasting of Pixel-Level Pseudo-Labels. - Lucas David 001; Hélio Pedrini; Zanoni Dias (VISIGRAPP (3): VISAPP, 2025)

SUPERMAGOv2: Protein Function Prediction via Transformer Embeddings and Bitscore-Weighted Features. - Gabriel Bianchin de Oliveira; Hélio Pedrini; Zanoni Dias (IEEE Access, 2025)