Studying the unfolding process of protein G and protein L under physical property space. - Liling Zhao; Jihua Wang; Xianghua Dou; Zanxia Cao (BMC Bioinform., 2009)

Refining the description of peptide backbone conformations improves protein simulations using the GROMOS 53A6 force field. - Zanxia Cao; Zhixiong Lin; Jun Wang 030; Haiyan Liu (J. Comput. Chem., 2009)

EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. - Bailing Zhou; Huiying Zhao; Jia-Feng Yu; Chengang Guo; Xianghua Dou; Feng Song; Guodong Hu; Zanxia Cao; Yuanxu Qu; Yuedong Yang; Yaoqi Zhou; Jihua Wang (Nucleic Acids Res., 2018)

EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. - Bailing Zhou; Baohua Ji; Kui Liu; Guodong Hu; Fei Wang; Qingshuai Chen; Ru Yu; Pingping Huang; Jing Ren; Chengang Guo; Huiying Zhao; Hongmei Zhang; et al. (Nucleic Acids Res., 2021)

EVlncRNA-Dpred: improved prediction of experimentally validated lncRNAs by deep learning. - Bailing Zhou; Maolin Ding; Jing Feng; Baohua Ji; Pingping Huang; Junye Zhang; Xue Yu; Zanxia Cao; Yuedong Yang; Yaoqi Zhou; Jihua Wang (Briefings Bioinform., 2023)

Synergistic Antimicrobial Mechanism of the Ultrashort Antimicrobial Peptide R3W4V with a Tadpole-like Conformation. - Zanxia Cao; Zhihong Shi; Mingqiong Tong; Dongying Yang; Lei Liu (J. Chem. Inf. Model., 2024)

Interaction of Asn297-Linked Glycan Ligands with the Fc Fragment of the Immunoglobulin Class G1: A Molecular Dynamics Simulation Study. - Mingqiong Tong; Peng Liu; Chaoqun Li 004; Zhongyu Zhang; Wan Sun; Pingxuan Dong; Na Fan; Xiaoyue Wang; Jing Liu; Chao Lv; Zanxia Cao; Yan Wang (J. Chem. Inf. Model., 2024)

Effects of toxin peptides PepA1 and PepA2 on human red blood cell membrane model: A molecular dynamics study. - Liling Zhao; Li Zhao; Haiyan Li; Zanxia Cao (Comput. Biol. Chem., 2025)

Designing a Novel Ultrashort Cyclic [R3W4V] Antimicrobial Peptide with Superior Antimicrobial Potential Based on the Transmembrane Structure to Facilitate Pore Formation. - Lei Liu; Zhihong Shi; Mingqiong Tong; Yaqing Fang; Dongying Yang; Jiafeng Yu; Zanxia Cao (J. Chem. Inf. Model., 2025)

Dimer-Enhanced Optimization: A First-Order Approach to Escaping Saddle Points in Neural Network Training. - Yue Hu; Zanxia Cao; Yingchao Liu (CoRR, 2025)