Mechanism-Based Discovery of Novel Substrates of Haloalkane Dehalogenases Using in Silico Screening. - Lukas Daniel; Tomas Buryska; Zbynek Prokop; Jirí Damborský; Jan Brezovsky (J. Chem. Inf. Model., 2015)

FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants. - David Bednar; Koen Beerens; Eva Sebestova; Jaroslav Bendl; Sagar D. Khare; Radka Chaloupkova; Zbynek Prokop; Jan Brezovsky; David Baker 001; Jirí Damborský (PLoS Comput. Biol., 2015)

Multi-Enzyme Pathway Optimisation Through Star-Shaped Reachable Sets. - Stanislav Mazurenko; Jirí Damborský; Zbynek Prokop (PACBB, 2017)

FireProt: web server for automated design of thermostable proteins. - Milos Musil; Jan Stourac; Jaroslav Bendl; Jan Brezovsky; Zbynek Prokop; Jaroslav Zendulka; Tomás Martínek; David Bednar; Jirí Damborský (Nucleic Acids Res., 2017)

Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling. - Sérgio M. Marques; Zuzana Dunajova; Zbynek Prokop; Radka Chaloupkova; Jan Brezovsky; Jirí Damborský (J. Chem. Inf. Model., 2017)

CalFitter: a web server for analysis of protein thermal denaturation data. - Stanislav Mazurenko; Jan Stourac; Antonin Kunka; Sava Nedeljkovic; David Bednar; Zbynek Prokop; Jirí Damborský (Nucleic Acids Res., 2018)

Detection of Chloroalkanes by Surface-Enhanced Raman Spectroscopy in Microfluidic Chips. - Zdenek Pilát; Martin Kizovský; Jan Jezek; Stanislav Krátký; Jaroslav Sobota; Martin Siler; Ota Samek; Tomas Buryska; Pavel Vanácek; Jirí Damborský; Zbynek Prokop; Pavel Zemánek (Sensors, 2018)

EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities. - Jirí Hon; Simeon Borko; Jan Stourac; Zbynek Prokop; Jaroslav Zendulka; David Bednar; Tomás Martínek; Jirí Damborský (Nucleic Acids Res., 2020)

CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability. - Antonin Kunka; David Lacko; Jan Stourac; Jirí Damborský; Zbynek Prokop; Stanislav Mazurenko (Nucleic Acids Res., 2022)