SCEPTRANS: an online tool for analyzing periodic transcription in yeast. - Andrzej Kudlicki; Maga Rowicka; Zbyszek Otwinowski (Bioinform., 2007)

Significance-Testing of Periodogram for Short Time Series. - Andrzej Kudlicki; Maga Rowicka; Zbyszek Otwinowski (BIOCOMP, 2008)

Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer. - Raquel Bromberg; Nick V. Grishin; Zbyszek Otwinowski (PLoS Comput. Biol., 2016)

Mutation severity spectrum of rare alleles in the human genome is predictive of disease type. - Jimin Pei; Lisa N. Kinch; Zbyszek Otwinowski; Nick V. Grishin (PLoS Comput. Biol., 2020)