Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads. - Zechen Chong; Jue Ruan; Chung-I Wu (Bioinform., 2012)

Towards accurate characterization of clonal heterogeneity based on structural variation. - Xian Fan; Wanding Zhou; Zechen Chong; Luay Nakhleh; Ken Chen 001 (BMC Bioinform., 2014)

MRLR: unraveling high-resolution meiotic recombination by linked reads. - Peng Xu; Timothy Kennell Jr.; Min Gao; Human Genome Structural Variation Consortium; Robert P. Kimberly; Zechen Chong (Bioinform., 2020)

Scalable De Novo Genome Assembly Using a Pregel-Like Graph-Parallel System. - Guimu Guo; Hongzhi Chen; Da Yan 001; James Cheng; Jake Y. Chen; Zechen Chong (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)