Identification of bacteriophage genome sequences with representation learning. - Zeheng Bai; Yao-zhong Zhang; Satoru Miyano; Rui Yamaguchi; Kosuke Fujimoto; Satoshi Uematsu; Seiya Imoto (Bioinform., 2022)

Zero-shot-capable identification of phage-host relationships with whole-genome sequence representation by contrastive learning. - Yao-zhong Zhang; Yunjie Liu; Zeheng Bai; Kosuke Fujimoto; Satoshi Uematsu; Seiya Imoto (Briefings Bioinform., 2023)

Investigation of the BERT model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings. - Yao-zhong Zhang; Zeheng Bai; Seiya Imoto (Bioinform., 2023)